| 2015 | CEC | Flow of control in linear genetic programming. | Justin Schonfeld, Daniel A. Ashlock |
| 2011 | CEC | Translation tables: A genetic code in a evolutionary algorithm. | Daniel A. Ashlock, Justin Schonfeld, Paul D. McNicholas |
| 2010 | CEC | Evolution for automatic assessment of the difficulty of sokoban boards. | Daniel A. Ashlock, Justin Schonfeld |
| 2010 | CIBCB | Classifying Cytochrome c Oxidase subunit 1 by translation initiation mechanism using side effect machines. | Justin Schonfeld, Dan Ashlock |
| 2009 | CEC | Robustness in evolved grid structures. | Daniel A. Ashlock, Justin Schonfeld, James Humphrey |
| 2008 | GECCO | Using coevolution to understand and validate game balance in continuous games. | Ryan E. Leigh, Justin Schonfeld, Sushil J. Louis |
| 2007 | CEC | A fractal representation for real optimization. | Daniel A. Ashlock, Justin Schonfeld |
| 2007 | CEC | The effect of selection on the development of mutational robustness. | Justin Schonfeld, Sushil J. Louis |
| 2007 | GECCO | A study of mutational robustness as the product of evolutionary computation. | Justin Schonfeld |
| 2006 | CEC | An Updated Taxonomy of Evolutionary Computation Problems using Graph-based Evolutionary Algorithms. | Daniel A. Ashlock, Kenneth Mark Bryden, Steven M. Corns, Justin Schonfeld |
| 2006 | CEC | Evaluating Distance Measures for RNA Motif Search. | Justin Schonfeld, Daniel A. Ashlock |
| 2006 | CIBCB | Filtration and Depth Annotation Improve Non-linear Projection for RNA Motif Discovery. | Justin Schonfeld, Dan Ashlock |
| 2005 | CEC | Nonlinear projection for the display of high dimensional distance data. | Dan Ashlock, Justin Schonfeld |
| 2005 | CIBCB | Depth Annotation of RNA Folds for Secondary Structure Motif Search. | Daniel A. Ashlock, Justin Schonfeld |
| 2005 | GECCO | A study of evolutionary robustness in stochastically tiled polyominos. | Justin Schonfeld, Daniel A. Ashlock |
| 2004 | CEC | A comparison of the robustness of evolutionary computation and random walks. | Justin Schonfeld, Daniel A. Ashlock |
| 2000 | ICSE | WYSIWYT testing in the spreadsheet paradigm: an empirical evaluation. | Karen J. Rothermel, Curtis R. Cook, Margaret M. Burnett, Justin Schonfeld, Thomas R. G. Green, Gregg Rothermel |