| 2009 | BIBE | Data Matching for Physical Integration of Biochemical Pathway Databases. | Jyh-Jong Tsay, Bo-Liang Wu, Chien-Wen Chen |
| 2003 | ICDM | Enhancing Techniques for Efficient Topic Hierarchy Integration. | Jyh-Jong Tsay, Hsuan-Yu Chen, Chi-Feng Chang, Ching-Han Lin |
| 2000 | PDPTA | The Design of User-Level Distributed Shared Memory System in SCI-Based Clusters. | Kuo-Shun Ding, Jyh-Jong Tsay |
| 1999 | PACLIC | Implementation and Evaluation of Scalable Approaches for Automatic Chinese Text Categorization. | Jyh-Jong Tsay, Jing-Doo Wang, Chun-Fu Pai, Ming-Kuen Tsay |
| 1999 | PDPTA | Design and Implementation of User-Level Network Programming Interface for SCI-Cluster. | Kuo-Shun Ding, Jyh-Jong Tsay |
| 1994 | ICPADS | Lock-Free Concurrent Tree Structures for Multiprocessor Systems. | Jyh-Jong Tsay, Hsin-Chi Li |
| 1993 | FOCS | External-Memory Computational Geometry (Preliminary Version) | Michael T. Goodrich, Jyh-Jong Tsay, Darren Erik Vengroff, Jeffrey Scott Vitter |
| 1992 | SODA | Searching Tree Structures on a Mesh of Processors. | Jyh-Jong Tsay |
| 1991 | SPAA | Multisearch Techniques for Implementing Data Structures on a Mesh-Connected Computer (Preliminary Version). | Mikhail J. Atallah, Frank K. H. A. Dehne, Russ Miller, Andrew Rau-Chaplin, Jyh-Jong Tsay |