Jyotishman Pathak
Publication record assembled from the DBLP archive of ranked conferences.
Papers indexed
80
Venues
19
Active years
2003–2023
Best venue rank
A*
Where they publish
Papers
80 indexed papers, newest first.
| Year | Venue | Title | Authors |
|---|---|---|---|
| 2023 | SMC | CoRL: A Cost-Responsive Learning Optimizer for Neural Networks. | Reshma Kar, Vijay Kumar Reddy Voddi, Braja Gopal Patra, Jyotishman Pathak |
| 2022 | AMIA | Developing a disease-specific symptom vocabulary for natural language processing. | Meghan Reading Turchioe, Winston Guo, Alexander Volodarskiy, Brittany Taylor, Mollie Hobensack, David Slotwiner, Jyotishman Pathak |
| 2021 | AMIA | Multi-site Evaluation of Longitudinal Changes in Ejection Fraction in Heart Failure Patients Through Data-driven Phenotyping. | Prakash Adekkanattu, Jennifer A. Pacheco, Joseph Kabariti, Daniel J. Stone, Yue Yu, Parag Goyal, Faraz S. Ahmad, Guoqian Jiang, Yuan Luo, Luke V. Rasmussen, Pascal S. Brandt, Zhenxing Xu, Jie Xu, Fei Wang, Natalie C. Benda, Thomas R. Campion Jr., Jyotishman Pathak |
| 2021 | AMIA | Supporting EHR-based Cohort Discovery Through User-centered Design: Results of an Early Formative Usability Study. | Natalie C. Benda, Pascal S. Brandt, Jessica S. Ancker, Jennifer A. Pacheco, Prakash Adekkanattu, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen |
| 2021 | AMIA | Deep Significance Clustering (DICE) a Heterogenous Population. | Yufang Huang, Yifan Liu, Peter A. D. Steel, Kelly M. Axsom, John R. Lee, Sri Lekha Tummalapalli, Alison Hermann, Rochelle Joly, Fei Wang, Jyotishman Pathak, Lakshminarayanan Subramanian, Yiye Zhang |
| 2021 | AMIA | Extracting Social Isolation Information From Psychiatric Notes in the Electronic Health Records. | Lauren A. Lepow, Braja Gopal Patra, Isotta Landi, Prakash Adekkanattu, Jyotishman Pathak, Mark Olfson, J. John Mann, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Priya Wickramaratne, Myrna Weissman, Benjamin S. Glicksberg, Alexander Charney |
| 2021 | AMIA | A Deep Learning Framework Using a Pre-trained BERT Model to Predict the Risk of Progression from Mild Cognitive Impairment to Alzheimer's Disease. | Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Fei Wang, Richard Isaacson, Jyotishman Pathak, Yuan Luo |
| 2021 | AMIA | Prescribing Pharmacogenomics Testing: Analyzing the Acceptance of Healthcare Providers through a Survey Study. | Mohit Manoj Sharma, Yonaka Harris, Yiye Zhang, Jyotishman Pathak |
| 2021 | AMIA | FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR. | Daniel J. Stone, Sijia Liu, Yuan Luo, Andrew Wen, Nansu Zong, Luke V. Rasmussen, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Fei Wang, Cui Tao, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang |
| 2021 | AMIA | On Constraints and Considerations for Extending Support for Natural Language Processing-Based FHIR Resource Generation. | Andrew Wen, Luke V. Rasmussen, Daniel J. Stone, Sijia Liu, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Yuan Luo, Fei Wang, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang |
| 2021 | AMIA | A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. | Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu |
| 2020 | AMIA | Feasibility of Cross-Platform EHR-Driven Phenotyping Using Clinical Quality Language. | Pascal S. Brandt, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Faraz S. Ahmad, Jie Xu, Zhenxing Xu, Jessica S. Ancker, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen |
| 2020 | AMIA | Weak Supervision to Classify Unstructured Clinical Text for Current Suicidal Ideation. | Marika M. Cusick, Prakash Adekkanattu, Thomas R. Campion Jr., Evan Sholle, Annie C. Myers, George Alexopoulos, Jyotishman Pathak |
| 2020 | AMIA | Visual Rating Scales for Patient-Reported Outcome Measurement: A National Validation Study. | Lisa Grossman Liu, Meghan Reading Turchioe, Annie C. Myers, Jyotishman Pathak, David K. Vawdrey, Ruth Masterson Creber |
| 2020 | AMIA | Provider perspectives on the clinical utility of using a risk prediction tool for postpartum depression. | Annie C. Myers, Fariha Ahsan, Rochelle Joly, Alison Hermann, Yiye Zhang, Michael Laskoff, Jyotishman Pathak, Meghan Reading Turchioe |
| 2020 | AMIA | Evaluating Commercially Available Mobile Apps for Depression Self-Management. | Annie C. Myers, Lewis Chesebrough, Ruixuan Hu, Meghan Reading Turchioe, Jyotishman Pathak, Ruth Masterson Creber |
| 2020 | AMIA | Healthcare Contacts Among Patients with Psychiatric Hospitalization Admitted Through the Emergency Department. | Wenna Xi, Samprit Banerjee, Robert B. Penfold, Gregory E. Simon, George Alexopoulos, Jyotishman Pathak |
| 2020 | AMIA | Identification of Alzheimer's Disease Subtypes from Electronic Health Records Using a Data-Driven Approach. | Jie Xu, Fei Wang, Zhenxing Xu, Prakash Adekkanattu, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Yuan Luo, Chengsheng Mao, Jennifer A. Pacheco, Luke V. Rasmussen, Yiye Zhang, Richard Isaacson, Jyotishman Pathak |
| 2019 | AMIA | Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. | Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak |
| 2019 | AMIA | Using Social Media to Study Mental Health Conditions - Challenges and Opportunities. | Vasa Curcin, Elizabeth Ford, Jyotishman Pathak, Goran Nenadic |
| 2019 | AMIA | Collecting Individual-Level Social Determinants of Health to Inform Patient-Centered Outcomes Research in Mental Health. | Joseph J. DeFerio, Annie C. Myers, John M. Meddar, Judith Cukor, Jyotishman Pathak |
| 2019 | AMIA | Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms. | Luke V. Rasmussen, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Jessica S. Ancker, Fei Wang, Zhenxing Xu, Jyotishman Pathak, Yuan Luo |
| 2019 | AMIA | Validation of a Computable Phenotype for Site-Specific Cancer Treatment. | Evan Sholle, Orrin Belden, Jaclyn Rosenzweig, Jennifer Levine, Joseph Kabariti, Thomas R. Campion Jr., Jyotishman Pathak |
| 2019 | AMIA | A Survey of Clinicians' Perception of Pharmacogenomics Testing for Antidepressants. | Yiye Zhang, Yonaka Harris, George Alexopoulos, Adam Stracher, Elizabeth Ross, Rainu Kaushal, Jyotishman Pathak |
| 2019 | WWW | Knowledge-aware Assessment of Severity of Suicide Risk for Early Intervention. | Manas Gaur, Amanuel Alambo, Joy Prakash Sain, Ugur Kursuncu, Krishnaprasad Thirunarayan, Ramakanth Kavuluru, Amit P. Sheth, Randy S. Welton, Jyotishman Pathak |
| 2018 | AMIA | Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes. | Prakash Adekkanattu, Evan Sholle, Joseph J. DeFerio, Jyotishman Pathak, Stephen B. Johnson, Thomas R. Campion Jr. |
| 2018 | AMIA | Methods for Integrating EHRs, Social Determinants of Health, and Built Environment Data for Patient-Centered Research. | Joseph J. DeFerio, Evan Sholle, Kathleen Lee, Jyotishman Pathak |
| 2018 | AMIA | Using EHRs to assess gender differences in the utilization of mental health services for patients diagnosed with major depression. | Cody M. Phelps, Trisha R. Sanghvi, Ningrui Zhang, Joseph J. DeFerio, Jyotishman Pathak |
| 2018 | CIKM | "Let Me Tell You About Your Mental Health!": Contextualized Classification of Reddit Posts to DSM-5 for Web-based Intervention. | Manas Gaur, Ugur Kursuncu, Amanuel Alambo, Amit P. Sheth, Raminta Daniulaityte, Krishnaprasad Thirunarayan, Jyotishman Pathak |
| 2017 | AMIA | Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository. | Richard C. Kiefer, Luke V. Rasmussen, Jennifer A. Pacheco, Peter Speltz, Joshua C. Denny, William K. Thompson, Jyotishman Pathak, Guoqian Jiang |
| 2017 | AMIA | A Framework for Data Quality Assessment in Clinical Research Datasets. | Kathleen Lee, Nicole Gray Weiskopf, Jyotishman Pathak |
| 2017 | AMIA | Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers. | Evan Sholle, Joseph Kabariti, Stephen B. Johnson, John P. Leonard, Jyotishman Pathak, Vinay I. Varughese, Curtis L. Cole, Thomas R. Campion Jr. |
| 2017 | AMIA | The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs. | Peter Speltz, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, William K. Thompson, Guoqian Jiang, Jyotishman Pathak, Joshua C. Denny |
| 2017 | SDM | Polyadic Regression and its Application to Chemogenomics. | Ioakeim Perros, Fei Wang, Ping Zhang, Peter B. Walker, Richard W. Vuduc, Jyotishman Pathak, Jimeng Sun |
| 2016 | AMIA | An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution. | Guoqian Jiang, William K. Thompson, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, Huan Mo, Peter Speltz, Joshua C. Denny, Jyotishman Pathak |
| 2016 | AMIA | Improving risk prediction for depression via Elastic Net regression - Results from Korea National Health Insurance Services Data. | Min-hyung Kim, Samprit Banerjee, Sang Min Park, Jyotishman Pathak |
| 2016 | AMIA | Predicting Prolonged Stay in the ICU Attributable to Bleeding in Patients Offered Plasma Transfusion. | Che Ngufor, Dennis Murphree, Sudhindra Upadhyaya, Nageswar Madde, Jyotishman Pathak, Rickey E. Carter, Daryl J. Kor |
| 2016 | AMIA | Standardized Representation of Clinical Study Data Dictionaries with CIMI Archetypes. | Deepak K. Sharma, Harold R. Solbrig, Eric Prud'hommeaux, Jyotishman Pathak, Guoqian Jiang |
| 2015 | AIME | A Heterogeneous Multi-Task Learning for Predicting RBC Transfusion and Perioperative Outcomes. | Che Ngufor, Sudhindra Upadhyaya, Dennis Murphree, Nageswar Madde, Daryl J. Kor, Jyotishman Pathak |
| 2015 | AMIA | Developing Intermediary Medication Phenotypes via Metabolomics Biotechnology Using an Electronic Health Record-Linked Biobank. | Matthew K. Breitenstein, Richard M. Weinshilboum, Jyotishman Pathak, Liewei Wang |
| 2015 | AMIA | Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. | Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Jennifer A. Pacheco, Enid N. H. Montague, Jie Xu, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak |
| 2015 | AMIA | A Genome- and Phenome- Wide Study of Diverticulosis. | Yoonjung Y. Joo, Jennifer A. Pacheco, Loren L. Armstrong, William K. Thompson, Robert J. Carroll, Joshua C. Denny, Peggy L. Peissig, James G. Linneman, Jyotishman Pathak, Girish N. Nadkarni, Laura Rasmussen-Torvik, M. Geoffrey Hayes, Abel N. Kho |
| 2015 | AMIA | Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools. | Enid N. H. Montague, Jie Xu, Luke V. Rasmussen, Joshua C. Denny, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Peter Speltz, William K. Thompson, Jyotishman Pathak |
| 2015 | AMIA | Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME. | Huan Mo, Jennifer A. Pacheco, Richard C. Kiefer, Luke V. Rasmussen, Jyotishman Pathak, Joshua C. Denny, William K. Thompson |
| 2015 | AMIA | (Authoring) Rules, (Distributed Query) Tools, and Drools: The challenging new world of high throughput phenotyping. | Jennifer A. Pacheco, Abel N. Kho, Jyotishman Pathak, Joshua C. Denny, Shawn N. Murphy |
| 2015 | AMIA | PhEMA: Phenotype Modeling, Sharing and Execution Architecture. | Jyotishman Pathak, Joshua C. Denny, William K. Thompson, Luke V. Rasmussen |
| 2015 | DSAA | Multi-task learning with selective cross-task transfer for predicting bleeding and other important patient outcomes. | Che Ngufor, Sudhindra Upadhyaya, Dennis Murphree, Daryl J. Kor, Jyotishman Pathak |
| 2014 | AMIA | Analysis of Online Information Searching for Cardiovascular Diseases on a Consumer Health Information Portal. | Ashutosh Jadhav, Amit P. Sheth, Jyotishman Pathak |
| 2014 | AMIA | An Analysis of Mayo Clinic Search Query Logs for Cardiovascular Diseases. | Ashutosh Jadhav, Amit P. Sheth, Jyotishman Pathak |
| 2014 | AMIA | Using PhenotypePortal for Checking Clinical Guideline Recommendation Compliance. | Lara Johnstun, Danielle Groat, Amol Bhalla, Kevin J. Peterson, Jyotishman Pathak, Adela Grando |
| 2014 | AMIA | Scalable and High-Throughput Execution of Clinical Quality Measures from Electronic Health Records using MapReduce and the JBoss(R) Drools Engine. | Kevin J. Peterson, Jyotishman Pathak |
| 2014 | AMIA | Evaluation of Existing Phenotype Authoring Tools for Clinical Research. | Luke V. Rasmussen, Jie Xu, Ruijue Liu, Qian Zhu, Jennifer A. Pacheco, Jyotishman Pathak, William K. Thompson, Joshua C. Denny, Huan Mo, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague |
| 2014 | AMIA | Qualitative evaluation of three phenotype information models to find methotrexate liver injury. | Qian Zhu, Huan Mo, Luke V. Rasmussen, Andrew R. Post, Jennifer A. Pacheco, Jie Xu, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Jyotishman Pathak |
| 2014 | ICDM | Clinical Decision Making: A Framework for Predicting Rx Response. | Aarti Sathyanarayana, Jyotishman Pathak, Rozalina G. McCoy, Santiago Romero-Brufau, Maryam Panaziahar, Jaideep Srivastava |
| 2013 | AMIA | PhenotypePortal: An Open-Source Library and Platform for Authoring, Executing and Visualization of Electronic Health Records Driven Phenotyping Algorithms. | Jyotishman Pathak, Cory M. Endle, Dale Suesse, Kevin J. Peterson, Craig Stancl, Dingcheng Li, Christopher G. Chute |
| 2013 | AMIA | Mining Drug-Drug Interaction Patterns from Linked Clinical Data. | Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute |
| 2013 | AMIA | Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements. | Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute |
| 2012 | AMIA | Using Electronic Health Records to Identify Heart Failure Cohorts with Differentiation for Preserved and Reduced Ejection Fraction. | Suzette J. Bielinski, Jyotishman Pathak, Hongfang Liu, Sunghwan Sohn, Gail P. Jarvik, David Carrell, Naveen Pereira, Vronique L. Roger |
| 2012 | AMIA | Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network. | Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo |
| 2012 | AMIA | Visualization and Reporting of Results for Electronic Health Records Driven Phenotyping using the Open-Source popHealth Platform. | Cory M. Endle, Sahana Murthy, Dale Suesse, Craig Stancle, Dingcheng Li, Lacey Hart, Christopher G. Chute, Jyotishman Pathak |
| 2012 | AMIA | Modeling and Executing Electronic Health Records Driven Phenotyping Algorithms using the NQF Quality Data Model and JBoss Drools Engine. | Dingcheng Li, Sahana Murthy, Davide Sottara, Christopher G. Chute, Stanley M. Huff, Jyotishman Pathak, Cory M. Endle, Dale Suesse, Craig Stancle |
| 2012 | AMIA | Using Electronic Health Records to Identify Patient Cohorts for Drug-Induced Thrombocytopenia, Neutropenia and Liver Injury. | Jyotishman Pathak, Aref Al-Kali, Jayant Talwalkar, Abel N. Kho, Joshua C. Denny, Sean P. Murphy, Kevin Bruce, Matthew J. Durski, Christopher G. Chute |
| 2012 | AMIA | Mining the Human Phenome using Semantic Web Technologies: A Case Study for Type 2 Diabetes. | Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute |
| 2012 | AMIA | Mining Genotype-Phenotype Associations from Electronic Health Records and Biorepositories using Semantic Web Technologies. | Jyotishman Pathak, Richard C. Kiefer, Robert R. Freimuth, Suzette J. Bielinski, Christopher G. Chute |
| 2012 | AMIA | A Distributed Semantic Web Approach for Cohort Identification. | Joseph Teagno, Richard C. Kiefer, Jyotishman Pathak, G. Q. Zhang, Satya Sanket Sahoo |
| 2012 | AMIA | An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms. | William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Peggy L. Peissig, Joshua C. Denny, Abel N. Kho, Aaron W. Miller, Jyotishman Pathak |
| 2012 | PSB | Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results. | Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute |
| 2008 | AMIA | LexValueSets: An Approach for Context-Driven Value Sets Extraction. | Jyotishman Pathak, Guoqian Jiang, Sridhar O. Dwarkanath, James D. Buntrock, Christopher G. Chute |
| 2008 | IRI | Modular ontology techniques and their applications in the biomedical domain. | Jyotishman Pathak, Thomas M. Johnson, Christopher G. Chute |
| 2007 | ICCS | Integrated Decision Algorithms for Auto-steered Electric Transmission System Asset Management. | James D. McCalley, Vasant G. Honavar, Sarah M. Ryan, William Q. Meeker, Daji Qiao, Ronald A. Roberts, Yuan Li, Jyotishman Pathak, Mujing Ye, Yili Hong |
| 2007 | ICWS | On Context-Specific Substitutability of Web Services. | Jyotishman Pathak, Samik Basu, Vasant G. Honavar |
| 2006 | DaWaK | Learning Classifiers from Distributed, Ontology-Extended Data Sources. | Doina Caragea, Jun Zhang, Jyotishman Pathak, Vasant G. Honavar |
| 2006 | ICDE | MoSCoE: A Framework for Modeling Web Service Composition and Execution. | Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant G. Honavar |
| 2006 | ICSOC | Modeling Web Services by Iterative Reformulation of Functional and Non-functional Requirements. | Jyotishman Pathak, Samik Basu, Vasant G. Honavar |
| 2006 | ICSOC | A Service-Oriented Architecture for Electric Power Transmission System Asset Management. | Jyotishman Pathak, Yuan Li, Vasant G. Honavar, James D. McCalley |
| 2006 | ICTAI | Selecting and Composing Web Services through Iterative Reformulation of Functional Specifications. | Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant G. Honavar |
| 2005 | ALT | Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources. | Doina Caragea, Jun Zhang, Jie Bao, Jyotishman Pathak, Vasant G. Honavar |
| 2005 | DIS | Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources. | Doina Caragea, Jun Zhang, Jie Bao, Jyotishman Pathak, Vasant G. Honavar |
| 2004 | CoopIS | Learning Classifiers from Semantically Heterogeneous Data. | Doina Caragea, Jyotishman Pathak, Vasant G. Honavar |
| 2003 | IRI | Information Extraction and Integration from Heterogeneous, Distributed, Autonomous Information Sources : A Federated Ontology-Driven Query-Centric Approach. | Jaime Reinoso, Adrian Silvescu, Doina Caragea, Jyotishman Pathak, Vasant G. Honavar |