| 2019 | IGARSS | Patch-Based and Tensor-Patch-Based Dimension Reduction Methods for Hyperspectral Images. | Boyu Feng, Jinfei Wang, Kaizhong Zhang |
| 2012 | COCOA | Algorithms for Forest Local Similarity. | Zhewei Liang, Kaizhong Zhang |
| 2010 | CPM | Algorithms for Forest Pattern Matching. | Kaizhong Zhang, Yunkun Zhu |
| 2007 | APBC | Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. | Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie |
| 2007 | COCOON | An Improved Algorithm for Tree Edit Distance Incorporating Structural Linearity. | Shihyen Chen, Kaizhong Zhang |
| 2007 | COCOON | A New Quartet Approach for Reconstructing Phylogenetic Trees: Quartet Joining Method. | Lei Xin, Bin Ma, Kaizhong Zhang |
| 2006 | BIBE | RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research. | Mugdha Khaladkar, Vivian Bellofatto, Jason T. L. Wang, Bin Tian, Kaizhong Zhang |
| 2006 | RECOMB | RNA Secondary Structure Prediction Via Energy Density Minimization. | Can Alkan, Emre Karako, Sleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler |
| 2005 | CPM | On the Longest Common Rigid Subsequence Problem. | Bin Ma, Kaizhong Zhang |
| 2005 | ICCS | Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. | Bin Ma, Lieyu Wu, Kaizhong Zhang |
| 2005 | IGARSS | Applying a wavelet method and linda for extracting detailed cartographic features from high resolution images. | Jinfei Wang, Tieling Chen, Kaizhong Zhang, William Tompkinson |
| 2005 | ISAAC | Space Efficient Algorithms for Ordered Tree Comparison. | Lusheng Wang, Kaizhong Zhang |
| 2005 | RECOMB | RNA-RNA Interaction Prediction and Antisense RNA Target Search. | Can Alkan, Emre Karako, Joseph H. Nadeau, Sleyman Cenk Sahinalp, Kaizhong Zhang |
| 2003 | CPM | Alignment between Two Multiple Alignments. | Bin Ma, Zhuozhi Wang, Kaizhong Zhang |
| 2003 | CPM | An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum. | Bin Ma, Kaizhong Zhang, Chengzhi Liang |
| 2002 | COCOON | Repetition Complexity of Words. | Lucian Ilie, Sheng Yu, Kaizhong Zhang |
| 2002 | IGARSS | A wavelet transform based method for road extraction from high-resolution remotely sensed data. | Tieling Chen, Jinfei Wang, Kaizhong Zhang |
| 2002 | SSDBM | ATreeGrep: Approximate Searching in Unordered Trees. | Dennis E. Shasha, Jason Tsong-Li Wang, Huiyuan Shan, Kaizhong Zhang |
| 2001 | MFCS | Alignment between Two RNA Structures. | Zhuozhi Wang, Kaizhong Zhang |
| 2001 | RECOMB | Edit distance between two RNA structures. | Guohui Lin, Bin Ma, Kaizhong Zhang |
| 2001 | SAC | Perfect phylogenetic networks with recombination. | Lusheng Wang, Kaizhong Zhang, Louxin Zhang |
| 2000 | CPM | The Longest Common Subsequence Problem for Arc-Annotated Sequences. | Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang |
| 2000 | SIGMOD | An Approximate Search Engine for Structural Databases. | Jason Tsong-Li Wang, Xiong Wang, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg |
| 1999 | CPM | Finding Common RNA Secondary Structures from RNA Sequences. | Zhuozhi Wang, Kaizhong Zhang |
| 1999 | CPM | Computing Similarity between RNA Structures. | Kaizhong Zhang, Lusheng Wang, Bin Ma |
| 1999 | KDD | Evaluating a Class of Distance-Mapping Algorithms for Data Mining and Clustering. | Jason Tsong-Li Wang, Xiong Wang, King-Ip (David) Lin, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang |
| 1998 | CPM | An Approximate Oracle for Distance in Metric Spaces. | Yanling Yang, Kaizhong Zhang, Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha |
| 1998 | CPM | Efficient Parallel Algorithm for the Editing Distance between Ordered Trees. | Kaizhong Zhang |
| 1997 | KDD | Automated Discovery of Active Motifs in Three Dimensional Molecules. | Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang |
| 1997 | SIGMOD | Structural Matching and Discovery in Document Databases. | Jason Tsong-Li Wang, Dennis E. Shasha, George Jyh-Shian Chang, Liam Relihan, Kaizhong Zhang, Girish Patel |
| 1996 | CPM | Efficient Parallel Algorithms for Tree Editing Problems. | Kaizhong Zhang |
| 1996 | KDD | Automated Discovery of Active Motifs in Multiple RNA Secondary Structures. | Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis E. Shasha, Kaizhong Zhang, Chia-Yo Chang |
| 1995 | CPM | On the Complexity of Comparing Evolutionary Trees (Extended Abstract). | Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang |
| 1995 | CPM | On the Editing Distance between Undirected Acyclic Graphs and Related Problems. | Kaizhong Zhang, Jason Tsong-Li Wang, Dennis E. Shasha |
| 1995 | SIGMOD | Pattern Matching and Pattern Discovery in Scientific, Program, and Document Databases. | Jason Tsong-Li Wang, Kaizhong Zhang, Dennis E. Shasha |
| 1994 | CPM | Alignment of Trees - An Alternative to Tree Edit. | Tao Jiang, Lusheng Wang, Kaizhong Zhang |
| 1994 | CPM | Matching with Matrix Norm Minimization. | Shouwen Tang, Kaizhong Zhang, Xiaolin Wu |
| 1994 | DCC | A Subjective Distortion Measure for Vector Quantization. | Xiaolin Wu, Kaizhong Zhang |
| 1994 | ICPR | The approximate graph matching problem. | Jason T. L. Wang, Kaizhong Zhang, Gung-Wei Chirn |
| 1994 | ICTAI | Approximate Graph Matching Using Probabilistic Hill Climbing Algorithms. | Jason Tsong-Li Wang, Kaizhong Zhang, Gung-Wei Chirn |
| 1994 | SIGMOD | Combinatorial Pattern Discovery for Scientific Data: Some Preliminary Results. | Jason Tsong-Li Wang, Gung-Wei Chirn, Thomas G. Marr, Bruce A. Shapiro, Dennis E. Shasha, Kaizhong Zhang |
| 1993 | CPM | A New Editing based Distance between Unordered Labeled Trees. | Kaizhong Zhang |
| 1992 | CPM | Fast Serial and Parallel Algorithms for Approximate Tree Matching with VLDC's. | Kaizhong Zhang, Dennis E. Shasha, Jason Tsong-Li Wang |
| 1992 | ICTAI | Pattern Matching in Unordered Trees. | Dennis E. Shasha, Jason Tsong-Li Wang, Kaizhong Zhang, Frank Yeong-Chyang Shih |
| 1992 | MFCS | Characterizing Regular Languages with Polynomial Densities. | Andrew Szilard, Sheng Yu, Kaizhong Zhang, Jeffrey O. Shallit |
| 1991 | DCC | A Better Tree-Structured Vector Quantizer. | Xiaolin Wu, Kaizhong Zhang |
| 1991 | ICTAI | A tool for tree pattern matching. | Jason Tsong-Li Wang, Kaizhong Zhang, Karpjoo Jeong, Dennis E. Shasha |
| 1989 | SPAA | Fast Parallel Algorithms for the Unit Cost Editing Distance Between Trees. | Dennis E. Shasha, Kaizhong Zhang |