| 2026 | AAAI | Imprint of the Forgotten: Stealthy Membership Inference in Unlearned Graph Neural Networks. | He Zhang, Bang Wu, Xiaoning Liu, Karin Verspoor, Xun Yi |
| 2026 | ACL | RADS: Reinforcement Learning-Based Sample Selection Improves Transfer Learning in Low-resource and Imbalanced Clinical Settings. | Wei Han, David Martinez Iraola, Anna Khanina, Lawrence Cavedon, Karin Verspoor |
| 2026 | ACL | How Robust Are Large Language Models for Clinical Numeracy? An Empirical Study on Numerical Reasoning Abilities in Clinical Contexts. | Minh-Vuong Nguyen, Fatemeh Shiri, Zhuang Li, Karin Verspoor |
| 2026 | PAKDD | Unlearning Spurious Concepts Enhances the Robustness of Concept-Based Explainable Models in Skin Cancer Diagnosis. | Anh Le Van, Andy Song, Arthur Tang, Karin Verspoor |
| 2025 | MICCAI | Knowledge Tree Driven Contextualized Instruction Tuning of Foundation Models for Epilepsy Drug Recommendation. | Duy Khoa Pham, Deval Mehta, Yiwen Jiang, Daniel Thom, Richard Shek-kwan Chang, Mohammad Nazem-Zadeh, Emma Foster, Timothy Fazio, Sarah Holper, Karin Verspoor, Jiahe Liu, Duong Nhu, Sarah Barnard, Terence J. O'Brien, Zhibin Chen, Jacqueline French, Patrick Kwan, Zongyuan Ge |
| 2025 | NAACL | Evaluating Numeracy of Language Models as a Natural Language Inference Task. | Rahmad Mahendra, Damiano Spina, Lawrence Cavedon, Karin Verspoor |
| 2024 | NAACL | Principles from Clinical Research for NLP Model Generalization. | Aparna Elangovan, Jiayuan He, Yuan Li, Karin Verspoor |
| 2024 | NAACL | Revisiting subword tokenization: A case study on affixal negation in large language models. | Thinh Truong, Yulia Otmakhova, Karin Verspoor, Trevor Cohn, Timothy Baldwin |
| 2023 | EMNLP | Effects of Human Adversarial and Affable Samples on BERT Generalizability. | Aparna Elangovan, Estrid He, Yuan Li, Karin Verspoor |
| 2023 | ICDM | Deep Outdated Fact Detection in Knowledge Graphs. | Huiling Tu, Shuo Yu, Vidya Saikrishna, Feng Xia, Karin Verspoor |
| 2022 | ACL | The patient is more dead than alive: exploring the current state of the multi-document summarisation of the biomedical literature. | Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Jey Han Lau |
| 2022 | ACL | What does it take to bake a cake? The RecipeRef corpus and anaphora resolution in procedural text. | Biaoyan Fang, Timothy Baldwin, Karin Verspoor |
| 2022 | COLING | LED down the rabbit hole: exploring the potential of global attention for biomedical multi-document summarisation. | Yulia Otmakhova, Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor, Jey Han Lau |
| 2022 | COLING | READ-BioMed@SocialDisNER: Adaptation of an Annotation System to Spanish Tweets. | Antonio Jimeno-Yepes, Karin Verspoor |
| 2022 | COLING | Noisy Label Regularisation for Textual Regression. | Yuxia Wang, Timothy Baldwin, Karin Verspoor |
| 2022 | CVPR | Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation. | Mingjie Li, Wenjia Cai, Karin Verspoor, Shirui Pan, Xiaodan Liang, Xiaojun Chang |
| 2022 | ECIR | The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. | Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zenan Zhai, Zubair Afzal, Trevor Cohn, Timothy Baldwin, Karin Verspoor |
| 2022 | EMNLP | M3: Multi-level dataset for Multi-document summarisation of Medical studies. | Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Antonio Jimeno-Yepes, Jey Han Lau |
| 2022 | IJCNLP | Not another Negation Benchmark: The NaN-NLI Test Suite for Sub-clausal Negation. | Thinh Hung Truong, Yulia Otmakhova, Timothy Baldwin, Trevor Cohn, Jey Han Lau, Karin Verspoor |
| 2022 | NAACL | Improving negation detection with negation-focused pre-training. | Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor |
| 2022 | WWW | Why Bother Enabling Biomedical Literature Analysis with Semantics? | Karin Verspoor |
| 2021 | AMIA | Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. | Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman |
| 2021 | EACL | Memorization vs. Generalization : Quantifying Data Leakage in NLP Performance Evaluation. | Aparna Elangovan, Jiayuan He, Karin Verspoor |
| 2021 | EACL | ChEMU-Ref: A Corpus for Modeling Anaphora Resolution in the Chemical Domain. | Biaoyan Fang, Christian Druckenbrodt, Saber A. Akhondi, Jiayuan He, Timothy Baldwin, Karin Verspoor |
| 2021 | ECIR | ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. | Jiayuan He, Biaoyan Fang, Hiyori Yoshikawa, Yuan Li, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor |
| 2021 | ECIR | Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research. | Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martnez |
| 2021 | PSB | Advanced Methods for Big Data Analytics in Women's Health. | Mary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez |
| 2020 | COLING | WikiUMLS: Aligning UMLS to Wikipedia via Cross-lingual Neural Ranking. | Afshin Rahimi, Timothy Baldwin, Karin Verspoor |
| 2020 | ECIR | ChEMU: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. | Dat Quoc Nguyen, Zenan Zhai, Hiyori Yoshikawa, Biaoyan Fang, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Saber A. Akhondi, Trevor Cohn, Timothy Baldwin, Karin Verspoor |
| 2020 | EMNLP | Improved Topic Representations of Medical Documents to Assist COVID-19 Literature Exploration. | Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Simon Suster |
| 2019 | ECIR | End-to-End Neural Relation Extraction Using Deep Biaffine Attention. | Dat Quoc Nguyen, Karin Verspoor |
| 2019 | NAACL | A Bag-of-concepts Model Improves Relation Extraction in a Narrow Knowledge Domain with Limited Data. | Jiyu Chen, Karin Verspoor, Zenan Zhai |
| 2018 | AMIA | DrKnow: A Diagnostic Learning Tool with Feedback from Automated Clinical Decision Support. | Piyapong Khumrin, Anna Ryan, Terry S. Judd, Karin Verspoor |
| 2018 | CoNLL | An Improved Neural Network Model for Joint POS Tagging and Dependency Parsing. | Dat Quoc Nguyen, Karin Verspoor |
| 2018 | LREC | Parallel Corpora for the Biomedical Domain. | Aurlie Nvol, Antonio Jimeno-Yepes, Mariana L. Neves, Karin Verspoor |
| 2018 | TrustCom | Semantic-Based Policy Composition for Privacy-Demanding Data Linkage. | Yang Lu, Richard O. Sinnott, Karin Verspoor |
| 2018 | TrustCom | Privacy-Preserving Access Control in Electronic Health Record Linkage. | Yang Lu, Richard O. Sinnott, Karin Verspoor, Udaya Parampalli |
| 2017 | CIKM | Learning Biological Sequence Types Using the Literature. | Mohamed Reda Bouadjenek, Karin Verspoor, Justin Zobel |
| 2017 | HIC | Understanding Health Professionals' Informal Learning in Online Social Networks: A Cross-Sectional Survey. | Xin Li, Karin Verspoor, Kathleen Gray, Stephen Barnett |
| 2017 | HIC | A Semantic-Based K-Anonymity Scheme for Health Record Linkage. | Yang Lu, Richard O. Sinnott, Karin Verspoor |
| 2017 | IJCAI | Sequence Clustering Methods and Completeness of Biological Database Search. | Qingyu Chen, Xiuzhen Zhang, Yu Wan, Justin Zobel, Karin Verspoor |
| 2016 | HIC | Analysing Health Professionals' Learning Interactions in an Online Social Network: A Longitudinal Study. | Xin Li, Karin Verspoor, Kathleen Gray, Stephen Barnett |
| 2016 | HIC | Finding and Exploring Health Information with a Slider-Based User Interface. | Patrick Cheong-Iao Pang, Karin Verspoor, Jon M. Pearce, Shanton Chang |
| 2016 | OZCHI | What are health website visitors doing: insights from visualisations towards exploratory search. | Patrick Cheong-Iao Pang, Mitchell Harrop, Karin Verspoor, Jon M. Pearce, Shanton Chang |
| 2016 | PSB | Towards Early Discovery of Salient Health Threats: A Social Media Emotion Classification Technique. | Bahadorreza Ofoghi, Meghan Mann, Karin Verspoor |
| 2016 | SDM | A Framework to Adjust Dependency Measure Estimates for Chance. | Simone Romano, Xuan Vinh Nguyen, James Bailey, Karin Verspoor |
| 2015 | CIKM | Evaluation of a Machine Learning Duplicate Detection Method for Bioinformatics Databases. | Qingyu Chen, Justin Zobel, Karin Verspoor |
| 2015 | CIKM | DTMBIO 2015: International Workshop on Data and Text Mining in Biomedical Informatics. | Min Song, Doheon Lee, Karin Verspoor |
| 2015 | CIKM | Extraction of Fine-grained Semantic Relations for the Human Variome. | Karin Verspoor, Go Eun Heo, Keun Young Kang, Min Song |
| 2015 | OZCHI | Better Health Explorer: Designing for Health Information Seekers. | Patrick Cheong-Iao Pang, Karin Verspoor, Jon M. Pearce, Shanton Chang |
| 2014 | COLING | Integrating UIMA with Alveo, a human communication science virtual laboratory. | Dominique Estival, Steve Cassidy, Karin Verspoor, Andrew MacKinlay, Denis Burnham |
| 2014 | EMNLP | What Can We Get From 1000 Tokens? A Case Study of Multilingual POS Tagging For Resource-Poor Languages. | Long Duong, Trevor Cohn, Karin Verspoor, Steven Bird, Paul Cook |
| 2014 | ICML | Standardized Mutual Information for Clustering Comparisons: One Step Further in Adjustment for Chance. | Simone Romano, James Bailey, Xuan Vinh Nguyen, Karin Verspoor |
| 2014 | SIGIR | Evaluation of Coreference Resolution for Biomedical Text. | Miji Choi, Karin Verspoor, Justin Zobel |
| 2014 | SIGIR | Designing for Health Exploratory Seeking Behaviour. | Patrick Cheong-Iao Pang, Karin Verspoor, Shanton Chang, Jon M. Pearce |
| 2014 | SIGIR | Practice-based Evidence in Medicine: Where Information Retrieval Meets Data Mining. | Karin Verspoor |
| 2013 | PSB | Detection of Protein Catalytic Sites in the Biomedical Literature. | Karin Verspoor, Andrew MacKinlay, Judith D. Cohn, Michael E. Wall |
| 2011 | ICMLA | Pattern Learning through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature. | K. E. Ravikumar, Haibin Liu, Judith D. Cohn, Michael E. Wall, Karin Verspoor |
| 2010 | KES | Visualization and Language Processing for Supporting Analysis across the Biomedical Literature. | Carsten Grg, Hannah J. Tipney, Karin Verspoor, William A. Baumgartner Jr., K. Bretonnel Cohen, John T. Stasko, Lawrence Hunter |
| 2010 | LREC | Test Suite Design for Biomedical Ontology Concept Recognition Systems. | K. Bretonnel Cohen, Christophe Roeder, William A. Baumgartner Jr., Lawrence Hunter, Karin Verspoor |
| 2008 | CICLING | A Semantics-Enhanced Language Model for Unsupervised Word Sense Disambiguation. | Shou-De Lin, Karin Verspoor |
| 2006 | PSB | Large-Scale Testing of Bibliome Informatics Using Pfam Protein Families. | Ana Gabriela Maguitman, Andreas Rechtsteiner, Karin Verspoor, Charlie E. M. Strauss, Luis M. Rocha |