| 2026 | AAAI | Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection. | Kaito Shiku, Kazuya Nishimura, Shinnosuke Matsuo, Yasuhiro Kojima, Ryoma Bise |
| 2025 | WACV | Ordinal Multiple-instance Learning for Ulcerative Colitis Severity Estimation with Selective Aggregated Transformer. | Kaito Shiku, Kazuya Nishimura, Daiki Suehiro, Kiyohito Tanaka, Ryoma Bise |
| 2023 | MICCAI | Mitosis Detection from Partial Annotation by Dataset Generation via Frame-Order Flipping. | Kazuya Nishimura, Ami Katanaya, Shinichiro Chuma, Ryoma Bise |
| 2023 | MICCAI | Proportion Estimation by Masked Learning from Label Proportion. | Takumi Okuo, Kazuya Nishimura, Hiroaki Ito, Kazuhiro Terada, Akihiko Yoshizawa, Ryoma Bise |
| 2023 | WACV | Multi-Frame Attention with Feature-Level Warping for Drone Crowd Tracking. | Takanori Asanomi, Kazuya Nishimura, Ryoma Bise |
| 2023 | WACV | Weakly Supervised Cell-Instance Segmentation with Two Types of Weak Labels by Single Instance Pasting. | Kazuya Nishimura, Ryoma Bise |
| 2022 | MICCAI | Unsupervised Deep Non-rigid Alignment by Low-Rank Loss and Multi-input Attention. | Takanori Asanomi, Kazuya Nishimura, Heon Song, Junya Hayashida, Hiroyuki Sekiguchi, Takayuki Yagi, Imari Sato, Ryoma Bise |
| 2022 | WACV | Consistent Cell Tracking in Multi-frames with Spatio-Temporal Context by Object-Level Warping Loss. | Junya Hayashida, Kazuya Nishimura, Ryoma Bise |
| 2021 | MICCAI | Cell Detection in Domain Shift Problem Using Pseudo-Cell-Position Heatmap. | Hyeonwoo Cho, Kazuya Nishimura, Kazuhide Watanabe, Ryoma Bise |
| 2021 | MICCAI | Cell Detection from Imperfect Annotation by Pseudo Label Selection Using P-classification. | Kazuma Fujii, Daiki Suehiro, Kazuya Nishimura, Ryoma Bise |
| 2021 | MICCAI | Semi-supervised Cell Detection in Time-Lapse Images Using Temporal Consistency. | Kazuya Nishimura, Hyeonwoo Cho, Ryoma Bise |
| 2020 | CVPR | MPM: Joint Representation of Motion and Position Map for Cell Tracking. | Junya Hayashida, Kazuya Nishimura, Ryoma Bise |
| 2020 | ECCV | Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation. | Kazuya Nishimura, Junya Hayashida, Chenyang Wang, Dai Fei Elmer Ker, Ryoma Bise |
| 2019 | MICCAI | Weakly Supervised Cell Instance Segmentation by Propagating from Detection Response. | Kazuya Nishimura, Dai Fei Elmer Ker, Ryoma Bise |
| 2016 | DEXA | Incremental Continuous Query Processing over Streams and Relations with Isolation Guarantees. | Salman Ahmed Shaikh, Dong Chao, Kazuya Nishimura, Hiroyuki Kitagawa |