| 2024 | MICCAI | From Feature Maps to Few-Shot Cell Segmentation. | Serban Vadineanu, Danil Maria Pelt, Oleh Dzyubachyk, Kees Joost Batenburg |
| 2023 | MICCAI | Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations. | Serban Vadineanu, Danil Maria Pelt, Oleh Dzyubachyk, Kees Joost Batenburg |
| 2020 | IWCIA | Atomic Super-Resolution Tomography. | Poulami Somanya Ganguly, Felix Lucka, Hermen Jan Hupkes, Kees Joost Batenburg |
| 2018 | IWCIA | A Multi-channel DART Algorithm. | Math T. Zeegers, Felix Lucka, Kees Joost Batenburg |
| 2015 | ICIP | Region based 4D tomographic image reconstruction: Application to cardiac x-ray CT. | Geert Van Eyndhoven, Kees Joost Batenburg, Jan Sijbers |
| 2012 | ECCV | Combined Motion Estimation and Reconstruction in Tomography. | Geert Van Eyndhoven, Jan Sijbers, Kees Joost Batenburg |
| 2011 | CAIP | Error Bounds on the Reconstruction of Binary Images from Low Resolution Scans. | Wagner Fortes, Kees Joost Batenburg |
| 2008 | ISVC | Threshold Selection for Segmentation of Dense Objects in Tomograms. | Wim van Aarle, Kees Joost Batenburg, Jan Sijbers |
| 2008 | IWCIA | A Reasoning Framework for Solving Nonograms. | Kees Joost Batenburg, Walter A. Kosters |
| 2007 | CAIP | Optimal Threshold Selection for Tomogram Segmentation by Reprojection of the Reconstructed Image. | Kees Joost Batenburg, Jan Sijbers |
| 2007 | ICIP | Dart: A Fast Heuristic Algebraic Reconstruction Algorithm for Discrete Tomography. | Kees Joost Batenburg, Jan Sijbers |
| 2006 | ECAI | A Learning Classifier Approach to Tomography. | Kees Joost Batenburg |
| 2006 | IWCIA | A Neural Network Approach to Real-Time Discrete Tomography. | Kees Joost Batenburg, Walter A. Kosters |
| 2004 | IWCIA | On the Reconstruction of Crystals Through Discrete Tomography. | Kees Joost Batenburg, Willem Jan Palenstijn |