| 2021 | AMIA | Reliable insights regarding medication outcomes from real world data- key principles of an evidence generation framework. | Rishi J. Desai, Sebastian Schneeweiss, Keith Marsolo, Shirley V. Wang, Robert Ball |
| 2021 | AMIA | U.S. COVID-19 Surveillance in PCORnet. | Sheryl A. Kluberg, Thomas Carton, Charles Bailey, Julia A. Fearrington, Keith Marsolo, Kshema M. Nagavedu, Jon Puro, Jason P. Block |
| 2019 | AMIA | Advancing the Collection and Integration of Patient-reported Outcome Data Implementation Architectures Using FHIR Technical Specifications. | Chun-Ju Hsiao, Stephanie Garcia, Daniella Meeker, Joseph Blumenthal, Keith Marsolo |
| 2018 | AMIA | National Patient-Centered Clinical Research Network (PCORnet) Distributed Research Network (DRN): Questions Answered from Preparatory-to-Research to Comparative Effectiveness. | Jessica L. Sturtevant, Darcy Louzao, Keith Marsolo, Kathleen McTigue, Lesley H. Curtis |
| 2017 | AMIA | The PCORnet Learning Cycle. | Keith Marsolo, Laura G. Qualls, Bradley G. Hammill, Jeffrey S. Brown, Lesley H. Curtis |
| 2015 | AMIA | Identifying and Understanding Data Quality Issues in a Pediatric Distributed Research Network. | Ritu Khare, Levon Utidjian, Gregory Schulte, Keith Marsolo, Charles Bailey |
| 2012 | AMIA | Building Gold Standard Corpora for Medical Natural Language Processing Tasks. | Louise Delger, Qi Li, Todd Lingren, Megan Kaiser, Katalin Molnr, Laura Stoutenborough, Michal Kouril, Keith Marsolo, Imre Solti |
| 2006 | CIKM | Structure-based querying of proteins using wavelets. | Keith Marsolo, Srinivasan Parthasarathy, Kotagiri Ramamohanarao |
| 2006 | ICDM | On the Use of Structure and Sequence-Based Features for Protein Classification and Retrieval. | Keith Marsolo, Srinivasan Parthasarathy |
| 2005 | AIME | A Model-Based Approach to Visualizing Classification Decisions for Patient Diagnosis. | Keith Marsolo, Srinivasan Parthasarathy, Michael D. Twa, Mark Bullimore |
| 2005 | BIBE | A Multi-Level Approach to SCOP Fold Recognition. | Keith Marsolo, Srinivasan Parthasarathy, Chris H. Q. Ding |
| 2005 | BIBE | Classification of Biomedical Data through Model-Based Spatial Averaging. | Keith Marsolo, Srinivasan Parthasarathy, Michael D. Twa, Mark Bullimore |
| 2005 | ICDM | Alternate Representation of Distance Matrices for Characterization of Protein Structure. | Keith Marsolo, Srinivasan Parthasarathy |
| 2004 | KDD | A New Approach to Protein Structure Mining and Alignment. | Hongyuan Li, Keith Marsolo, Srinivasan Parthasarathy, Dmitrii Polshakov |
| 2004 | KDD | Discovering Spatial Relationships Between Approximately Equivalent Patterns in Contact Maps. | Keith Marsolo, Hui Yang, Srinivasan Parthasarathy, Sameep Mehta |