| 2023 | WWW | Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. | Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao |
| 2022 | AMIA | Eye-SpatialNet: Spatial Information Extraction from Ophthalmology Notes. | Surabhi Datta, Tasneem Kaochar, Hio Cheng Lam, Nelly Nwosu, Alice Z. Chuang, Robert M. Feldman, Kirk Roberts |
| 2022 | AMIA | Toward a Neural Semantic Parsing System for EHR Question Answering. | Sarvesh Soni, Kirk Roberts |
| 2022 | LREC | DrugEHRQA: A Question Answering Dataset on Structured and Unstructured Electronic Health Records For Medicine Related Queries. | Jayetri Bardhan, Anthony M. Colas, Kirk Roberts, Daisy Zhe Wang |
| 2022 | LREC | A Cross-document Coreference Dataset for Longitudinal Tracking across Radiology Reports. | Surabhi Datta, Hio Cheng Lam, Atieh Pajouhi, Sunitha Mogalla, Kirk Roberts |
| 2022 | LREC | RadQA: A Question Answering Dataset to Improve Comprehension of Radiology Reports. | Sarvesh Soni, Meghana Gudala, Atieh Pajouhi, Kirk Roberts |
| 2021 | HCI | Patient-Provider Communication Training Models for Interactive Speech Devices. | Patricia Ngantcha, Muhammad Amith, Cui Tao, Kirk Roberts |
| 2021 | SIGIR | On the Quality of the TREC-COVID IR Test Collections. | Ellen M. Voorhees, Kirk Roberts |
| 2020 | AMIA | RadLex Normalization in Radiology Reports. | Surabhi Datta, Jordan Godfrey-Stovall, Kirk Roberts |
| 2020 | AMIA | Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review. | Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts |
| 2020 | AMIA | Patient Cohort Retrieval using Transformer Language Models. | Sarvesh Soni, Kirk Roberts |
| 2020 | COLING | Extracting Adherence Information from Electronic Health Records. | Jordan Sanders, Meghana Gudala, Kathleen E. Hamilton, Nishtha Prasad, Jordan Godfrey-Stovall, Eduardo Blanco, Jane Elizabeth Hamilton, Kirk Roberts |
| 2020 | LREC | Rad-SpatialNet: A Frame-based Resource for Fine-Grained Spatial Relations in Radiology Reports. | Surabhi Datta, Morgan Ulinski, Jordan Godfrey-Stovall, Shekhar Khanpara, Roy Riascos-Castaneda, Kirk Roberts |
| 2020 | LREC | Evaluation of Dataset Selection for Pre-Training and Fine-Tuning Transformer Language Models for Clinical Question Answering. | Sarvesh Soni, Kirk Roberts |
| 2019 | AMIA | A frame semantic overview of NLP-based information extraction for cancer-related EHR notes: a scoping review. | Surabhi Datta, Elmer V. Bernstam, Kirk Roberts |
| 2019 | AMIA | A Dataset Recommendation System for Researchers based on Publications. | Braja Gopal Patra, Kirk Roberts, Hulin Wu |
| 2019 | AMIA | Using FHIR to Construct a Corpus of Clinical Questions Annotated with Logical Forms and Answers. | Sarvesh Soni, Meghana Gudala, Daisy Zhe Wang, Kirk Roberts |
| 2019 | AMIA | Relation Extraction from Clinical Narratives Using Pre-trained Language Models. | Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu |
| 2018 | AMIA | Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC). | Dina Demner-Fushman, Joseph M. Tonning, Kin Wah Fung, Phong Do, Richard D. Boyce, Kirk Roberts |
| 2018 | AMIA | Benchmarking Information Retrieval for Precision Oncology: the TREC Precision Medicine Track. | Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant |
| 2018 | LREC | A FrameNet for Cancer Information in Clinical Narratives: Schema and Annotation. | Kirk Roberts, Yuqi Si, Anshul Gandhi, Elmer V. Bernstam |
| 2017 | AMIA | Leveraging existing corpora for de-identification of psychiatric notes using domain adaptation. | Hee-Jin Lee, Yaoyun Zhang, Kirk Roberts, Hua Xu |
| 2017 | AMIA | Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. | Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, Trevor Cohen, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu |
| 2017 | AMIA | A Semantic Parsing Method for Mapping Clinical Questions to Logical Forms. | Kirk Roberts, Braja Gopal Patra |
| 2017 | MICCAI | Representation Learning for Retinal Vasculature Embeddings. | Luca Giancardo, Kirk Roberts, Zhongming Zhao |
| 2016 | AMIA | Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions. | Yassine Mrabet, Halil Kilicoglu, Kirk Roberts, Dina Demner-Fushman |
| 2016 | AMIA | Resource Classification for Medical Questions. | Kirk Roberts, Laritza M. Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman |
| 2016 | CVPR | Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation. | Hoo-Chang Shin, Kirk Roberts, Le Lu, Dina Demner-Fushman, Jianhua Yao, Ronald M. Summers |
| 2016 | LREC | Annotating Named Entities in Consumer Health Questions. | Halil Kilicoglu, Asma Ben Abacha, Yassine Mrabet, Kirk Roberts, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman |
| 2016 | LREC | Annotating Logical Forms for EHR Questions. | Kirk Roberts, Dina Demner-Fushman |
| 2015 | AMIA | An Ensemble Method for Spelling Correction in Consumer Health Questions. | Halil Kilicoglu, Marcelo Fiszman, Kirk Roberts, Dina Demner-Fushman |
| 2015 | AMIA | Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language. | Kirk Roberts, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman |
| 2014 | AMIA | Error Propagation in EHRs via Copy/Paste: An Analysis of Relative Dates. | Kirk Roberts, Amos Cahan, Dina Demner-Fushman |
| 2014 | AMIA | Automatically Classifying Question Types for Consumer Health Questions. | Kirk Roberts, Halil Kilicoglu, Marcelo Fiszman, Dina Demner-Fushman |
| 2014 | LREC | Annotating Question Decomposition on Complex Medical Questions. | Kirk Roberts, Kate Masterton, Marcelo Fiszman, Halil Kilicoglu, Dina Demner-Fushman |
| 2012 | AMIA | A Machine Learning Approach for Identifying Anatomical Locations of Actionable Findings in Radiology Reports. | Kirk Roberts, Bryan Rink, Sanda M. Harabagiu, Richard H. Scheuermann, Seth M. Toomay, Travis Browning, Teresa Bosler, Ronald M. Peshock |
| 2012 | LREC | Annotating Spatial Containment Relations Between Events. | Kirk Roberts, Travis R. Goodwin, Sanda M. Harabagiu |
| 2012 | LREC | EmpaTweet: Annotating and Detecting Emotions on Twitter. | Kirk Roberts, Michael A. Roach, Joseph Johnson, Josh Guthrie, Sanda M. Harabagiu |
| 2011 | EMNLP | Unsupervised Learning of Selectional Restrictions and Detection of Argument Coercions. | Kirk Roberts, Sanda M. Harabagiu |
| 2010 | FlAIRS | Toponym Disambiguation Using Events. | Kirk Roberts, Cosmin Adrian Bejan, Sanda M. Harabagiu |
| 2010 | LREC | C-3: Coherence and Coreference Corpus. | Cristina Nicolae, Gabriel Nicolae, Kirk Roberts |
| 2010 | LREC | A Linguistic Resource for Semantic Parsing of Motion Events. | Kirk Roberts, Srikanth Gullapalli, Cosmin Adrian Bejan, Sanda M. Harabagiu |
| 2009 | ACL | Building an Annotated Textual Inference Corpus for Motion and Space. | Kirk Roberts |
| 2008 | LREC | Scaling Answer Type Detection to Large Hierarchies. | Kirk Roberts, Andrew Hickl |