| 2012 | IJCNN | Inference of S-system models of genetic networks by solving linear programming problems and sets of linear algebraic equations. | Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama |
| 2011 | CEC | Constrained multimodal function optimization using a simple evolutionary algorithm. | Shuhei Kimura, Koki Matsumura |
| 2010 | CEC | Effective parameter estimation for S-system models using LPMs and evolutionary algorithms. | Shuhei Kimura, Yusuke Amano, Koki Matsumura, Mariko Okada-Hatakeyama |
| 2010 | ICCSA | Bootstrap Analysis of Genetic Networks inferred by the Method Using LPMs. | Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama |
| 2008 | CEC | Density estimation using crossover kernels and its application to a real-coded genetic algorithm. | Shuhei Kimura, Koki Matsumura |
| 2007 | IJCNN | Inference of Genetic Networks using a Reduced NGnet Model. | Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Kotaro Yoshida, Koki Matsumura, Mariko Hatakeyama |
| 2006 | IJCNN | Function Approximation Approach to the Inference of Normalized Gaussian Network Models of Genetic Networks. | Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama |
| 2005 | CEC | Inference of genetic networks using neural network models. | Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama |
| 2005 | GECCO | Genetic algorithms using low-discrepancy sequences. | Shuhei Kimura, Koki Matsumura |