| 2025 | FlAIRS | Identifying Developmental Intellectual Disability as a SUDEP Risk Marker from Epilepsy Monitoring Unit Reports Using Large Language Models. | Ran Hu, Rashmie Abeysinghe, Gorbachev Jowah, Shiqiang Tao, Samden D. Lhatoo, Guo-Qiang Zhang, Licong Cui |
| 2025 | HCI | Designing a Narrative-Based Video Game for Adolescents Coping with a Parent's Cancer. | Sophia Hamilton, Xubing Hao, Sharon Andrews, Eveyln Roldan, Carlos Martinez, Jane Hamilton, Muhammad Tuan Amith, Licong Cui |
| 2025 | HCI | Constructing A Conversation-First Dialogue Model for Comprehensive, Evidence-Based Counseling for HPV Vaccination for Young Adults. | Lu Tang, Chenying Weng, Serena Hou, Lara S. Savas, Ana Neumann, Nicole Moore, Jane Hamilton, Daniel Rhee, Cui Tao, Licong Cui, Muhammad Amith |
| 2025 | TIME | Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials. | Xiaojin Li, Yan Huang, Rashmie Abeysinghe, Zenan Sun, Hongyu Chen, Pengze Li, Xing He, Shiqiang Tao, Cui Tao, Jiang Bian, Licong Cui, Guo-Qiang Zhang |
| 2024 | AIME | Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS. | Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui |
| 2023 | WWW | Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. | Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao |
| 2022 | AMIA | Temporal Cohort Logic. | Guo-Qiang Zhang, Xiaojin Li, Yan Huang, Licong Cui |
| 2022 | AMIA | Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. | Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui |
| 2021 | AMIA | A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology. | Rashmie Abeysinghe, Fengbo Zheng, Licong Cui |
| 2021 | AMIA | Identifying Sleep-Related Factors Associated with Cognitive Function in a Hispanics/Latinos Cohort: A Dual Random Forest Approach. | Xiaojin Li, Licong Cui, Fei Wang, Paul E. Schulz, Guo-Qiang Zhang |
| 2020 | AMIA | A lexical-based approach for exhaustive detection of missing hierarchical IS-A relations in SNOMED CT. | Fengbo Zheng, Jay Shi, Licong Cui |
| 2019 | AMIA | Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus. | Rashmie Abeysinghe, Michael A. Brooks, Licong Cui |
| 2019 | AMIA | Discriminative Sleep Patterns of Alzheimer's Disease via Tensor Factorization. | Yejin Kim, Xiaoqian Jiang, Luyao Chen, Xiaojin Li, Licong Cui |
| 2019 | AMIA | SeizureBank: A Repository of Analysis-ready Seizure Signal Data. | Xiaojin Li, Yan Huang, Shiqiang Tao, Licong Cui, Samden D. Lhatoo, Guo-Qiang Zhang |
| 2018 | AMIA | Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels. | Rashmie Abeysinghe, Xufeng Qu, Licong Cui |
| 2018 | AMIA | A Cross-Cohort Query System for the National Sleep Research Resource (NSRR). | Licong Cui, Guo-Qiang Zhang |
| 2017 | AMIA | Can SNOMED CT Changes Be Used as a Surrogate Standard for Evaluating the Performance of Its Auditing Methods? | Guo-Qiang Zhang, Yan Huang, Licong Cui |
| 2017 | AMIA | Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns. | Rashmie Abeysinghe, Michael A. Brooks, Jeffery C. Talbert, Licong Cui |
| 2017 | AMIA | SpindleSphere: A Web-based Platform for Large-scale Sleep Spindle Analysis and Visualization. | Xiaojin Li, Licong Cui, Shiqiang Tao, Ningzhou Zeng, Guo-Qiang Zhang |
| 2017 | AMIA | Facilitating Cohort Discovery by Enhancing Ontology Exploration, Query Management and Query Sharing for Large Clinical Data Repositories. | Shiqiang Tao, Licong Cui, Xi Wu, Guo-Qiang Zhang |
| 2017 | AMIA | Spark-MCA: Large-scale, Exhaustive Formal Concept Analysis for Evaluating the Semantic Completeness of SNOMED CT. | Wei Zhu, Guo-Qiang Zhang, Licong Cui |
| 2016 | AMIA | ODaCCI: Ontology-guided Data Curation for Multisite Clinical Research Data Integration in the NINDS Center for SUDEP Research. | Licong Cui, Yan Huang, Shiqiang Tao, Samden D. Lhatoo, Guo-Qiang Zhang |
| 2016 | AMIA | DCDS: A Real-time Data Capture and Personalized Decision Support System for Heart Failure Patients in Skilled Nursing Facilities. | Wei Zhu, Lingyun Luo, Tarun Jain, Rebecca S. Boxer, Licong Cui, Guo-Qiang Zhang |
| 2015 | AMIA | COHeRE: Cross-Ontology Hierarchical Relation Examination for Ontology Quality Assurance. | Licong Cui |
| 2015 | AMIA | COBE: A Conjunctive Ontology Browser and Explorer for Visualizing SNOMED CT Fragments. | Mengmeng Sun, Wei Zhu, Shiqiang Tao, Licong Cui, Guo-Qiang Zhang |
| 2014 | AMIA | A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS. | Licong Cui, Shiqiang Tao, Guo-Qiang Zhang |
| 2014 | AMIA | MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System. | Guo-Qiang Zhang, Licong Cui, Samden D. Lhatoo, Satya S. Sahoo |
| 2012 | AMIA | EpiDEA: Extracting Structured Epilepsy and Seizure Information from Patient Discharge Summaries for Cohort Identification. | Licong Cui, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo, Alireza Bozorgi |