| 2025 | DIS | Bayesian Grammar Refinement for Efficient Equation Discovery. | Jure Brence, Saso Dzeroski, Ljupco Todorovski |
| 2025 | DIS | A Variational Autoencoder for N-Ary Trees. | Martin Percinic, Sebastian Meznar, Ljupco Todorovski, Saso Dzeroski |
| 2022 | DIS | Discovery of Differential Equations Using Probabilistic Grammars. | Bostjan Gec, Nina Omejc, Jure Brence, Saso Dzeroski, Ljupco Todorovski |
| 2021 | INISTA | Extractive Text Summarization Based on Selectivity Ranking. | Dino Aljevic, Ljupco Todorovski, Sanda Martincic-Ipsic |
| 2017 | DIS | General Meta-Model Framework for Surrogate-Based Numerical Optimization. | Ziga Luksic, Jovan Tanevski, Saso Dzeroski, Ljupco Todorovski |
| 2016 | DIS | Learning Ensembles of Process-Based Models by Bagging of Random Library Samples. | Nikola Simidjievski, Ljupco Todorovski, Saso Dzeroski |
| 2013 | DIS | Inductive Process Modeling of Rab5-Rab7 Conversion in Endocytosis. | Jovan Tanevski, Ljupco Todorovski, Yannis Kalaidzidis, Saso Dzeroski |
| 2012 | AAAI | Discovering Constraints for Inductive Process Modeling. | Ljupco Todorovski, Will Bridewell, Pat Langley |
| 2010 | AAAI | The Induction and Transfer of Declarative Bias. | Will Bridewell, Ljupco Todorovski |
| 2008 | PAKDD | A Minimal Description Length Scheme for Polynomial Regression. | Aleksandar Peckov, Saso Dzeroski, Ljupco Todorovski |
| 2007 | ILP | Learning Declarative Bias. | Will Bridewell, Ljupco Todorovski |
| 2005 | AAAI | Inducing Hierarchical Process Models in Dynamic Domains. | Ljupco Todorovski, Will Bridewell, Oren Shiran, Pat Langley |
| 2005 | ICML | Reducing overfitting in process model induction. | Will Bridewell, Narges Bani Asadi, Pat Langley, Ljupco Todorovski |
| 2004 | DaWaK | Inductive Databases of Polynomial Equations. | Saso Dzeroski, Ljupco Todorovski, Peter Ljubic |
| 2003 | DIS | Using Constraints in Discovering Dynamics. | Saso Dzeroski, Ljupco Todorovski, Peter Ljubic |
| 2003 | DIS | Modelling Soil Radon Concentration for Earthquake Prediction. | Saso Dzeroski, Ljupco Todorovski, Boris Zmazek, Janja Vaupotic, Ivan Kobal |
| 2003 | IDA | Using Domain Specific Knowledge for Automated Modeling. | Ljupco Todorovski, Saso Dzeroski |
| 2002 | ICDM | Adapting classification rule induction to subgroup discovery. | Nada Lavrac, Peter A. Flach, Branko Kavsek, Ljupco Todorovski |
| 2002 | ICML | Inducing Process Models from Continuous Data. | Pat Langley, Javier Nicols Snchez, Ljupco Todorovski, Saso Dzeroski |
| 2001 | DIS | Theory Revision in Equation Discovery. | Ljupco Todorovski, Saso Dzeroski |
| 2001 | ICDM | A Comparison of Stacking with Meta Decision Trees to Bagging, Boosting, and Stacking with other Methods. | Bernard Zenko, Ljupco Todorovski, Saso Dzeroski |
| 2000 | ICML | Discovering the Structure of Partial Differential Equations from Example Behaviour. | Ljupco Todorovski, Saso Dzeroski, Ashwin Srinivasan, Jonathan P. Whiteley, David Gavaghan |
| 1997 | ICML | Declarative Bias in Equation Discovery. | Ljupco Todorovski, Saso Dzeroski |
| 1993 | ICML | Discovering Dynamics. | Saso Dzeroski, Ljupco Todorovski |