| 2023 | COCOON | Randomized Data Partitioning with Efficient Search, Retrieval and Privacy-Preservation. | M. Oguzhan Klekci |
| 2022 | DCC | Counting with Prediction: Rank and Select Queries with Adjusted Anchoring. | M. Oguzhan Klekci |
| 2020 | CPM | FM-Index Reveals the Reverse Suffix Array. | Arnab Ganguly, Daniel Gibney, Sahar Hooshmand, M. Oguzhan Klekci, Sharma V. Thankachan |
| 2019 | RECOMB | Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave. | Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M. Oguzhan Klekci, David P. Woodruff, Sleyman Cenk Sahinalp |
| 2019 | SISAP | Privacy-Preserving Text Similarity via Non-Prefix-Free Codes. | M. Oguzhan Klekci, Ismail Habib, Amir Aghabiglou |
| 2018 | CPM | Non-Overlapping Indexing - Cache Obliviously. | Sahar Hooshmand, Paniz Abedin, M. Oguzhan Klekci, Sharma V. Thankachan |
| 2016 | AAIM | Efficient Algorithms for the Order Preserving Pattern Matching Problem. | Simone Faro, M. Oguzhan Klekci |
| 2016 | NOMS | GENCROBAT: Efficient transmission and processing of the massive genomic data. | M. Oguzhan Klekci, Mahmut Samil Sagiroglu |
| 2016 | SPIRE | Inverse Range Selection Queries. | M. Oguzhan Klekci |
| 2015 | DCC | Range Selection Queries in Data Aware Space and Time. | M. Oguzhan Klekci, Sharma V. Thankachan |
| 2014 | CPM | Shortest Unique Substring Query Revisited. | Atalay Mert Ileri, M. Oguzhan Klekci, Bojian Xu |
| 2014 | DCC | Enhanced Variable-Length Codes: Improved Compression with Efficient Random Access. | M. Oguzhan Klekci |
| 2013 | ALENEX | Fast Packed String Matching for Short Patterns. | Simone Faro, M. Oguzhan Klekci |
| 2013 | ISIT | Uniquely decodable and directly accessible non-prefix-free codes via wavelet trees. | M. Oguzhan Klekci |
| 2012 | SPIRE | Fast Multiple String Matching Using Streaming SIMD Extensions Technology. | Simone Faro, M. Oguzhan Klekci |
| 2011 | DCC | Compressed Context Modeling for Text Compression. | M. Oguzhan Klekci |
| 2008 | ISAAC | A Method to Overcome Computer Word Size Limitation in Bit-Parallel Pattern Matching. | M. Oguzhan Klekci |
| 2001 | Interspeech | Turkish word segmentation using morphological analyzer. | M. Oguzhan Klekci, Mehmed zkan |