| 2021 | PAKDD | A Hierarchical Structure-Aware Embedding Method for Predicting Phenotype-Gene Associations. | Lin Wang, MingMing Liu, WenQian He, Xu Jin, Maoqiang Xie, Yalou Huang |
| 2018 | PAKDD | Neighborhood Constraint Matrix Completion for Drug-Target Interaction Prediction. | Xin Fan, YuXiang Hong, Xiaohu Liu, Yaogong Zhang, Maoqiang Xie |
| 2017 | ISCC | Weighted Graph Constraint and Group Centric Non-negative Matrix Factorization for gene-phenotype association prediction. | Yaogong Zhang, Yuan Wang, Jiahui Liu, Yalou Huang, Maoqiang Xie |
| 2015 | CIKM | Modeling Parameter Interactions in Ranking SVM. | Yaogong Zhang, Jun Xu, Yanyan Lan, Jiafeng Guo, Maoqiang Xie, Yalou Huang, Xueqi Cheng |
| 2012 | PAKDD | Prioritizing Disease Genes by Bi-Random Walk. | Maoqiang Xie, TaeHyun Hwang, Rui Kuang |
| 2011 | CIDM | Multiple query-dependent RankSVM aggregation for document retrieval. | Yang Wang, Min Lu, Xiaodong Pang, Maoqiang Xie, Yalou Huang |
| 2011 | WWW | Cooperative anti-spam system based on multilayer agents. | Wenxuan Shi, Maoqiang Xie, Yalou Huang |
| 2010 | PAKDD | Cost-Sensitive Listwise Ranking Approach. | Min Lu, Maoqiang Xie, Yang Wang, Jie Liu, Yalou Huang |