| 2020 | IJCNN | Hybrid Evolutionary Framework for Selection of Genes Predicting Breast Cancer Relapse. | Lorenzo Perino, Silvia Cascianelli, Marco Masseroli |
| 2019 | BIBE | De Novo Sequence-Based Method for ncRPI Prediction using Structural Information. | Michele Leone, Marta Galvani, Marco Masseroli |
| 2019 | CIBCB | Non-negative Matrix Tri-Factorization for Data Integration and Network-based Drug Repositioning. | Gaia Ceddia, Pietro Pinoli, Stefano Ceri, Marco Masseroli |
| 2018 | CIKM | Demonstration of GenoMetric Query Language. | Stefano Ceri, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli |
| 2018 | IJCNN | Modeling Gene Transcriptional Regulation by Means of Hyperplanes Genetic Clustering. | Fabrizio Frasca, Matteo Matteucci, Marco Masseroli, Marco J. Morelli |
| 2017 | DATA | Experiences in the Development of a Data Management System for Genomics. | Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli |
| 2017 | ER | Conceptual Modeling for Genomics: Building an Integrated Repository of Open Data. | Anna Bernasconi, Stefano Ceri, Alessandro Campi, Marco Masseroli |
| 2016 | EDBT | Data Management for Next Generation Genomic Computing. | Stefano Ceri, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli, Francesco Venco |
| 2014 | CIBCB | Latent Dirichlet Allocation based on Gibbs Sampling for gene function prediction. | Pietro Pinoli, Davide Chicco, Marco Masseroli |
| 2014 | IC3K | Discovering New Gene Functionalities from Random Perturbations of Known Gene Ontological Annotations. | Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli |
| 2014 | IC3K | Random Perturbations of Term Weighted Gene Ontology Annotations for Discovering Gene Unknown Functionalities. | Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli |
| 2013 | BIBE | Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery. | Arif Canakoglu, Marco Masseroli, Stefano Ceri, Luca Tettamanti, Giorgio Ghisalberti, Alessandro Campi |
| 2013 | BIBE | A discrete optimization approach for SVD best truncation choice based on ROC curves. | Davide Chicco, Marco Masseroli |
| 2013 | BIBE | Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations. | Pietro Pinoli, Davide Chicco, Marco Masseroli |
| 2012 | IJCNN | Probabilistic Latent Semantic Analysis for prediction of Gene Ontology annotations. | Marco Masseroli, Davide Chicco, Pietro Pinoli |
| 2011 | CBMS | Multi-domain data search and retrieval: A service-oriented Life Science scenario. | Giorgio Ghisalberti, Marco Masseroli, Salvatore Vadacca |
| 2011 | ISDA | Semantically improved genome-wide prediction of Gene Ontology annotations. | Marco Masseroli, Marco Tagliasacchi, Davide Chicco |
| 2010 | BIBE | Detection of Errors and Inconsistencies in Biomolecular Databases through Integrative Approaches and Quality Controls. | Marco Masseroli, Giorgio Ghisalberti, Luca Tettamanti |
| 2010 | BIBE | Prediction of Gene Ontology Annotations Based on Gene Functional Clustering. | Marco Tagliasacchi, Roberto Sarati, Marco Masseroli |
| 2009 | BIBE | Data Mining Techniques for the Identification of Genes with Expression Levels Related to Breast Cancer Prognosis. | Gabriele Giarratana, Marco Pizzera, Marco Masseroli, Enzo Medico, Pier Luca Lanzi |
| 2009 | BIBE | Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks. | Marco Tagliasacchi, Marco Masseroli |
| 2006 | AMIA | A Web-Based Multi-Database System Supporting Distributed Collaborative Management and Sharing of Microarray Experiment Information. | Sarah Burgarella, Dario Cattaneo, Marco Masseroli |
| 2006 | AMIA | GALCO: a Web-Based System for Biomedical Information Sharing. | Francesco Cogno, Marco Galimberti, Stefano Bonacina, Francesco Pinciroli, Marco Masseroli |
| 2006 | AMIA | Genomic Functional Investigation through Statistical Analysis of Protein Families and Domains. | Andrea Maffezzoli, Andrea Franceschini, Elisa Bellistri, Francesco Pinciroli, Marco Masseroli |
| 2006 | AMIA | PLARIS: a Web Framework for Offering Automatically Classified Biomedical Multimedia Resources. | Luca Mazzola, Gianpiero Limongiello, Marco Masseroli, Francesco Pinciroli |
| 2006 | AMIA | A Web System for Management of Medical Informatics Courses at "Politecnico di Milano". | Enrico Montanari, Marco Masseroli, Francesco Pinciroli |
| 2004 | BIBE | GeneWebEx: Gene Annotation Web Extraction, Aggregation, and Updating from Web-Based Biomolecular Databanks. | Marco Masseroli, Andrea Stella, Natalia Meani, Myriam Alcalay, Francesco Pinciroli |
| 2003 | AMIA | A Colorimetric Characterization of the Raw Digital Data of the Visible Human Dataset Images. | Stefano Bonacina, Marco Masseroli, Francesco Menegoni, Giorgio Quattrone, Francesco Pinciroli |
| 2002 | AMIA | A Database-based Application for Management and Statistical Analysis of High-throughput Gene Expression Data. | Marco Masseroli, Pietro Cerveri, Pier Giuseppe Pelicci, Myriam Alcalay |
| 2002 | AMIA | Software Agents for Extracting, Aggregating, and Updating Data from Web Pages of Genomic Databanks. | Andrea Stella, Marco Masseroli, Myriam Alcalay, Francesco Pinciroli |
| 2001 | AMIA | Use of Web Server-Side Technologies for Making the Most of the Hardware Variety in Hospital Information Systems. | Federico Ferrario, Marco Masseroli, Francesco Pinciroli |
| 2000 | AMIA | Remote access to anatomical information: an integration between semantic knowledge and visual data. | Pietro Cerveri, Marco Masseroli, Francesco Pinciroli |
| 2000 | AMIA | Java Technology and BioImages: Towards Remote High Quality Medical Imaging. | Marco Masseroli, Pietro Cerveri, Francesco Pinciroli |
| 2000 | AMIA | Software Agents and Java Technology for Cardiology Data Retrieval and Visualization. | Marco Masseroli, Pietro Cerveri, Francesco Pinciroli |