| 2011 | PSB | Session Introduction. | Gil Alterovitz, Silvio Cavalcanti, Taro Muso, Marco Ramoni, May Wang |
| 2010 | PSB | Session Introduction. | Gil Alterovitz, Silvio Cavalcanti, Taro Muso, Marco Ramoni, May Wang |
| 2009 | ICASSP | Robust cross-race gene expression analysis. | Hsun-Hsien Chang, Marco Ramoni |
| 2009 | PSB | Session Introduction. | Gil Alterovitz, Judith A. Blake, Jonathan M. Dreyfuss, Drew Endy, Marco Ramoni |
| 2008 | AMIA | Characterization of Patients who Suffer Asthma Exacerbations using Data Extracted from Electronic Medical Records. | Blanca E. Himes, Isaac S. Kohane, Marco Ramoni, Scott T. Weiss |
| 2008 | PSB | System-Wide Peripheral Biomarker Discovery Using Information Theory. | Gil Alterovitz, Michael Xiang, Jonathan Liu, Amelia Chang, Marco Ramoni |
| 2007 | BIBE | Linking Protein Mass with Function via Organismal Massome Networks. | Gil Alterovitz, Eugenia Lyashenko, Michael Xiang, Marco Ramoni |
| 2007 | BIBE | A Systematic Approach to Quantifying Evolutionary Functional Trends Across the Universal Tree of Life. | Gil Alterovitz, Taro Muso, Paresh Malalur, Marco Ramoni |
| 2007 | UAI | Statistical Mechanics of Biological Networks. | Marco Ramoni |
| 2006 | AMIA | Discovering Biological Guilds through Topological Abstraction. | Gil Alterovitz, Marco Ramoni |
| 2006 | CBMS | Dynamic Bayesian Networks in Modelling Cellular Systems: a Critical Appraisal on Simulated Data. | Fulvia Ferrazzi, Paola Sebastiani, Isaac S. Kohane, Marco Ramoni, Riccardo Bellazzi |
| 2006 | RECOMB | Clustering Short Gene Expression Profiles. | Ling Wang, Marco Ramoni, Paola Sebastiani |
| 2001 | ICML | Clustering Continuous Time Series. | Paola Sebastiani, Marco Ramoni |
| 2000 | AAAI | Multivariate Clustering by Dynamics. | Marco Ramoni, Paola Sebastiani, Paul R. Cohen |
| 1999 | AISTATS | Learning conditional probabilities from incomplete databases - An experimental comparison. | Marco Ramoni, Paola Sebastiani |
| 1999 | AISTATS | Model folding for data subject to nonresponse. | Paola Sebastiani, Marco Ramoni |
| 1999 | IDA | Discovering Dynamics Using Bayesian Clustering. | Paola Sebastiani, Marco Ramoni, Paul R. Cohen, John Warwick, James Davis |
| 1998 | UAI | Decision Theoretic Foundations of Graphical Model Selection. | Paola Sebastiani, Marco Ramoni |
| 1997 | AISTATS | Robust Parameter Learning in Bayesian Networks with Missing Data. | Marco Ramoni, Paola Sebastiani |
| 1997 | IDA | The Use of Exogenous Knowledge to Learn Bayesian Networks from Incomplete Databases. | Marco Ramoni, Paola Sebastiani |
| 1997 | UAI | Learning Bayesian Networks from Incomplete Databases. | Marco Ramoni, Paola Sebastiani |
| 1995 | AIME | Medical Decision Making Using Ignorant Influence Diagrams. | Marco Ramoni, Alberto Riva, Mario Stefanelli, Vimla L. Patel |
| 1995 | IJCAI | Ignorant Influence Diagrams. | Marco Ramoni |
| 1994 | UAI | Belief Maintenance in Bayesian Networks. | Marco Ramoni, Alberto Riva |