| 2016 | GECCO | Quantifying Deception: A Case Study in the Evolution of Antimicrobial Resistance. | Margaret J. Eppstein, C. Brandon Ogbunugafor |
| 2016 | GECCO | Evolving Probabilistically Significant Epistatic Classification Rules for Heterogeneous Big Datasets. | John P. Hanley, Margaret J. Eppstein, Jeffrey S. Buzas, Donna M. Rizzo |
| 2014 | GECCO | Evolving small GRNs with a top-down approach. | Javier Garcia-Bernardo, Margaret J. Eppstein |
| 2014 | GECCO | Evolved spacecraft trajectories for low earth orbit. | David W. Hinckley Jr., Karol Zieba, Darren L. Hitt, Margaret J. Eppstein |
| 2014 | GECCO | NM landscapes: beyond NK. | Narine Manukyan, Margaret J. Eppstein, Jeffrey S. Buzas |
| 2013 | GECCO | Improving uniformity of solution spacing in biobjective evolution. | Karim J. Chichakly, Margaret J. Eppstein |
| 2012 | GECCO | Evolutionary feature selection for classification: a plug-in hybrid vehicle adoption application. | Joseph S. Krupa, Somdeb Chatterjee, Ethan Eldridge, Donna M. Rizzo, Margaret J. Eppstein |
| 2012 | GECCO | Evolutionary mining for multivariate associations in large time-varying data sets: a healthcare network application. | Narine Manukyan, Margaret J. Eppstein, Jeffrey D. Horbar, Kathleen A. Leahy, Michael J. Kenny, Shreya Mukherjee, Donna M. Rizzo |
| 2012 | GECCO | Differential evolution of constants in genetic programming improves efficacy and bloat. | Shreya Mukherjee, Margaret J. Eppstein |
| 2008 | CIBCB | Very large scale ReliefF for genome-wide association analysis. | Margaret J. Eppstein, Paul Haake |
| 2008 | GECCO | The influence of scaling and assortativity on takeover times in scale-free topologies. | Joshua L. Payne, Margaret J. Eppstein |
| 2008 | GECCO | Parameterizing pair approximations for takeover dynamics. | Joshua L. Payne, Margaret J. Eppstein |
| 2007 | GECCO | Feature selection and classification in noisy epistatic problems using a hybrid evolutionary approach. | Drew DeHaas, Jesse Craig, Colin Rickert, Margaret J. Eppstein, Paul Haake, Kirsten Stor |
| 2007 | GECCO | Takeover times on scale-free topologies. | Joshua L. Payne, Margaret J. Eppstein |
| 2007 | GECCO | Why your mates shouldn't date. | Joshua L. Payne, Margaret J. Eppstein |
| 2007 | GECCO | Using pair approximations to predict takeover dynamics in spatially structured populations. | Joshua L. Payne, Margaret J. Eppstein |
| 2006 | GECCO | Emergent mating topologies in spatially structured genetic algorithms. | Joshua L. Payne, Margaret J. Eppstein |
| 2005 | GECCO | A hybrid genetic algorithm with pattern search for finding heavy atoms in protein crystals. | Joshua L. Payne, Margaret J. Eppstein |
| 2003 | GECCO | A Case for Codons in Evolutionary Algorithms. | Joshua Gilbert, Margaret J. Eppstein |