| 2012 | AMIA | Combining Knowledge and Data Driven Insights for Identifying Risk Factors using Electronic Health Records. | Jimeng Sun, Jianying Hu, Dijun Luo, Marianthi Markatou, Fei Wang, Shahram Ebadollahi, Zahra Daar, Walter F. Stewart |
| 2012 | SDM | SOR: Scalable Orthogonal Regression for Low-Redundancy Feature Selection and its Healthcare Applications. | Dijun Luo, Fei Wang, Jimeng Sun, Marianthi Markatou, Jianying Hu, Shahram Ebadollahi |
| 2008 | AMIA | Automated Knowledge Acquisition from Clinical Narrative Reports. | Xiaoyan Wang, Amy E. Chused, Nomie Elhadad, Carol Friedman, Marianthi Markatou |
| 2007 | AMIA | Detection of Practice Pattern Trends through Natural Language Processing of Clinical Narratives and Biomedical Literature. | Elizabeth S. Chen, Peter D. Stetson, Yves A. Lussier, Marianthi Markatou, George Hripcsak, Carol Friedman |
| 2005 | AMIA | Mining a clinical data warehouse to discover disease-finding associations using co-occurrence statistics. | Hui Cao, Marianthi Markatou, Genevieve B. Melton, Michael F. Chiang, George Hripcsak |