| 2024 | CIBCB | A Multiobjective Evolutionary Algorithm for Colon Cancer Biomarkers Identification on Gene Expression Data. | Jorge Cubillos-Chaparro, Mrcio Dorn, Manuel Villalobos-Cid, Mario Inostroza-Ponta |
| 2020 | CEC | A dynamic evolutionary multi-agent system to predict the 3D structure of proteins. | Leonardo de Lima Correa, Luciana Arantes, Pierre Sens, Mario Inostroza-Ponta, Mrcio Dorn |
| 2020 | CIBCB | A multimodal multi-objective optimisation approach to deal with the phylogenetic inference problem. | Csar Rivera, Mario Inostroza-Ponta, Manuel Villalobos-Cid |
| 2018 | CEC | A Genetic Algorithm Based on Restricted Tournament Selection for the 3D-PSP Problem. | Bruno Borguesan, Pedro Henrique Narloch, Mario Inostroza-Ponta, Mrcio Dorn |
| 2018 | CEC | Performance Comparison of Multi-Objective Local Search Strategies to Infer Phylogenetic Trees. | Manuel Villalobos-Cid, Mrcio Dorn, Mario Inostroza-Ponta |
| 2018 | CEC | Understanding the Relationship Between Decision and Objective Space in the Multi-Objective Phylogenetic Inference Problem. | Manuel Villalobos-Cid, Mrcio Dorn, Mario Inostroza-Ponta |
| 2017 | CEC | An evolutionary multi-agent algorithm to explore the high degree of selectivity in three-dimensional protein structures. | Leonardo de Lima Correa, Mario Inostroza-Ponta, Mrcio Dorn |
| 2017 | CEC | Using local search strategies to improve the performance of NSGA-II for the Multi-Criteria Minimum Spanning Tree problem. | Jorge Parraga-Alava, Mrcio Dorn, Mario Inostroza-Ponta |
| 2016 | CLEI | A bi-objective model for gene clustering combining expression data and external biological knowledge. | Jorge Parraga-Alava, Mario Inostroza-Ponta |
| 2015 | CEC | A Memetic Algorithm for the Quadratic Assignment Problem with parallel local search. | Matthew Harris, Regina Berretta, Mario Inostroza-Ponta, Pablo Moscato |
| 2015 | GECCO | A Memetic Algorithm for Protein Structure Prediction based on Conformational Preferences of Aminoacid Residues. | Mario Inostroza-Ponta, Camilo Farfn, Mrcio Dorn |
| 2013 | CEC | A knowledge-based genetic algorithm to predict three-dimensional structures of polypeptides. | Mrcio Dorn, Mario Inostroza-Ponta, Luciana S. Buriol, Hugo Verli |
| 2011 | ICA3PP | Clustering Nodes in Large-Scale Biological Networks Using External Memory Algorithms. | Ahmed Shamsul Arefin, Mario Inostroza-Ponta, Luke Mathieson, Regina Berretta, Pablo Moscato |