| 2023 | AIME | Spatial Knowledge Transfer with Deep Adaptation Network for Predicting Hospital Readmission. | Ameen Abdel Hai, Mark G. Weiner, Alice Livshits, Jeremiah R. Brown, Anuradha Paranjape, Zoran Obradovic, Daniel J. Rubin |
| 2022 | AMIA | Deep Learning vs Traditional Models for Predicting Hospital Readmission among Patients with Diabetes. | Ameen Abdel Hai, Mark G. Weiner, Anuradha Paranjape, Alice Livshits, Jeremiah R. Brown, Zoran Obradovic, Daniel J. Rubin |
| 2022 | AMIA | The Informatics of RECOVER: Understanding the Post Acute Sequelae of SARS-CoV-2 Infection. | Mark G. Weiner, Charles Bailey, Richard R. Moffitt, Shawn N. Murphy |
| 2021 | AMIA | Comparing Automated Extraction to Manual Chart Review for COVID-Specific Research Data Abstraction: A Case Study. | Andrew L. Yin, Winston L. Guo, Evan Sholle, Mangala Rajan, Laura C. Pinheiro, Parag Goyal, Justin Choi, Mark N. Alshak, Han Li, Graham T. Wehmeyer, Mark G. Weiner, Monika M. Safford, Thomas R. Campion Jr., Curtis L. Cole |
| 2018 | AMIA | Applying Predictive Analytics on Administrative and Perioperative Data to Assess Physician Decision Making and Post-Operative Testing for Acute Myocardial Infarction. | Victor J. Lei, Mark D. Neuman, Mark G. Weiner, ThaiBinh Luong, Alex M. Bain, Daniel E. Polsky, Kevin G. Volpp, John H. Holmes, Amol S. Navathe |
| 2018 | AMIA | Interactive Cost-benefit Analysis: Providing Real-World Financial Context to Predictive Analytics. | Mark G. Weiner, Wasiq Sheikh, Harold P. Lehmann |
| 2017 | AMIA | Collaborative Pharming. | Mark G. Weiner, Jennifer Boehne, Terese Kornet, Ross Koppel |
| 2016 | AMIA | Informatics to Transform Med Wreck to Medication Reconciliation. | Mark G. Weiner, Charlene R. Weir, Terrence J. Adam, Edgar Y. Chou |
| 2014 | AMIA | There is Nothing as Practical as a Good Theory: Building the PCORNet Clinical Data Research Network. | Charles D. Borromeo, Bari Dzomba, Mark G. Weiner, Harold P. Lehmann |
| 2013 | AMIA | Research Informatics : Re-engineering the Research Enterprise. | Mark G. Weiner, Philip R. O. Payne, Peter J. Emb, Shawn N. Murphy |
| 2012 | AMIA | An Electronic System for Managing a Radiation Oncology Quality Assurance Process Using REDCap. | Peter Gabriel, Jarod Finlay, Mark G. Weiner |
| 2012 | AMIA | HDD Terminology and Information Model Browsing Tools. | Senthil K. Nachimuthu, Susan Matney, Mark G. Weiner, John H. Holmes, Stanley M. Huff, Lee Min Lau |
| 2012 | AMIA | NETs Fishing in the Clinical Data Warehouse. | Marie Synnestvedt, Mark G. Weiner, Bonnie Bennet, Hillary Faust, David Metz |
| 2012 | AMIA | An automated transition to ICD-10 encoding. | Rob Wynden, Henry Grause, Ketty Mobed, Hari Rekapalli, Prakash Lakshminarayanan, Mark G. Weiner |
| 2006 | AMIA | Caregiving Burden Responses Differ for Internet and Telephone Data Collection. | Mary Segal, Mark G. Weiner |
| 2006 | AMIA | Assessing the accuracy of diagnostic codes in administrative databases: The impact of the sampling frame on sensitivity and specificity. | Mark G. Weiner, Jennifer H. Garvin, Thomas R. Ten Have |
| 2003 | AMIA | Derivation of Malignancy Status from ICD-9 Codes. | Mark G. Weiner, Alice Livshits, Carol Carozzoni, Erin McMenamin, Gene Gibson, Alison W. Loren, Sean Hennessy |
| 2002 | AMIA | Information Systems Developments to Detect and Analyze Chemotherapy-associated Adverse Drug Events. | Mark G. Weiner, Alice Livshits, Carol Carozzoni, Erin McMenamin, Gene Gibson, Alison W. Loren, Sean Hennessy |
| 2001 | AMIA | Web-based, Interactive Receiver Operating Characteristics (ROC) Analysis. | Mark G. Weiner, Robert M. Centor |
| 2001 | AMIA | Metadata Tables to Enable Dynamic Data Modeling and Web Interface Design: The SEER Example. | Mark G. Weiner, Micah Sherr, Abigail Cohen |
| 1999 | AMIA | Web-Based Linear Regression Analysis of Remote Datasets. | Mark G. Weiner, Abigail Cohen, Meena Seshamani, Alice Livshits, Alan Hillman |
| 1998 | AMIA | Virtual clinical trials: case control experiments utilizing a health services research workstation. | Mark G. Weiner, Alan Hillman |