| 2026 | ISSAC | Global Curvature of Difference Operators. | Marcus Lawson, Mark van Hoeij |
| 2024 | ISSAC | Solving Third Order Linear Difference Equations in Terms of Second Order Equations. | Heba Bou Kaedbey, Mark van Hoeij, Man Cheung Tsui |
| 2022 | ISSAC | Desingularization and p-Curvature of Recurrence Operators. | Yi Zhou, Mark van Hoeij |
| 2017 | ISSAC | Functional Decomposition Using Principal Subfields. | Luiz Emilio Allem, Juliane G. Capaverde, Mark van Hoeij, Jonas Szutkoski |
| 2017 | ISSAC | Closed Form Solutions for Linear Differential and Difference Equations. | Mark van Hoeij |
| 2015 | ISSAC | Computing Hypergeometric Solutions of Second Order Linear Differential Equations using Quotients of Formal Solutions. | Erdal Imamoglu, Mark van Hoeij |
| 2013 | ISSAC | The complexity of factoring univariatepolynomials over the rationals: tutorial abstract. | Mark van Hoeij |
| 2013 | ISSAC | Second order differential equations with hypergeometric solutions of degree three. | Vijay Jung Kunwar, Mark van Hoeij |
| 2011 | ISSAC | 2-descent for second order linear differential equations. | Tingting Fang, Mark van Hoeij |
| 2011 | ISSAC | Practical polynomial factoring in polynomial time. | William Hart, Mark van Hoeij, Andrew Novocin |
| 2011 | ISSAC | Generating subfields. | Mark van Hoeij, Jrgen Klners, Andrew Novocin |
| 2010 | ISSAC | Solving recurrence relations using local invariants. | Yongjae Cha, Mark van Hoeij, Giles Levy |
| 2010 | ISSAC | Liouvillian solutions of irreducible second order linear difference equations. | Mark van Hoeij, Giles Levy |
| 2010 | ISSAC | Finding all bessel type solutions for linear differential equations with rational function coefficients. | Mark van Hoeij, Quan Yuan |
| 2010 | LATIN | Gradual Sub-lattice Reduction and a New Complexity for Factoring Polynomials. | Mark van Hoeij, Andrew Novocin |
| 2009 | ISSAC | Liouvillian solutions of irreducible linear difference equations. | Yongjae Cha, Mark van Hoeij |
| 2008 | ISSAC | Solving differential equations in terms of bessel functions. | Ruben Debeerst, Mark van Hoeij, Wolfram Koepf |
| 2007 | ISSAC | Approximate bivariate factorization: a geometric viewpoint. | Andr Galligo, Mark van Hoeij |
| 2007 | ISSAC | Solving third order linear differential equations in terms of second order equations. | Mark van Hoeij |
| 2005 | ISSAC | Solving second order linear differential equations with Klein's theorem. | Mark van Hoeij, Jacques-Arthur Weil |
| 2004 | ISSAC | Closed form solutions of linear odes having elliptic function coefficients. | Reinhold Burger, George Labahn, Mark van Hoeij |
| 2004 | ISSAC | Algorithms for polynomial GCD computation over algebraic function fields. | Mark van Hoeij, Michael B. Monagan |
| 2002 | ISSAC | A modular GCD algorithm over number fields presented with multiple extensions. | Mark van Hoeij, Michael B. Monagan |
| 2001 | ISSAC | Towards factoring bivariate approximate polynomials. | Robert M. Corless, Mark Giesbrecht, Mark van Hoeij, Ilias S. Kotsireas, Stephen M. Watt |
| 1999 | ISSAC | Desingularization of Linear Difference Operators with Polynomial Coefficients. | Sergei A. Abramov, Mark van Hoeij |
| 1998 | ISSAC | Rational Solutions of Linear Difference Equations. | Mark van Hoeij |
| 1997 | ISSAC | A Method for the Integration of Solutions of Ore Equations. | Sergei A. Abramov, Mark van Hoeij |
| 1996 | ISSAC | Rational Solutions of the Mixed Differential Equation and Its Application to Factorization of Differential Operators. | Mark van Hoeij |
| 1995 | ISSAC | An Algorithm for Computing the Weierstrass Normal Form. | Mark van Hoeij |
| 1994 | ISSAC | Computing Parameterizations of Rational Algebraic Curves. | Mark van Hoeij |