| 2009 | PDPTA | The Impact of Supercomputing in the Next Generation Sequencing Data Mining. | Mary Qu Yang, Sang C. Suh, Kaiqi Xiong, Jack Y. Yang, Hamid R. Arabnia |
| 2008 | PDPTA | High Performance Computing and Computational Intelligence: Link to the Translational Medicine and Personalized Healthcare - Banquet Keynote Lecture. | Jack Y. Yang, Mary Qu Yang, Hamid R. Arabnia |
| 2007 | BIBE | Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification. | Hualong Bu, Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang |
| 2007 | BIBE | Ensemble of Probabilistic Neural Networks for Protein Fold Recognition. | Yuehui Chen, Xueqin Zhang, Mary Qu Yang, Jack Y. Yang |
| 2007 | BIBE | Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids. | Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang |
| 2007 | BIBE | Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification. | Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang |
| 2007 | BIBE | An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. | Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng |
| 2007 | BIBE | Promoter studies in the human genome: one perspective on an unfinished story. | Mary Qu Yang, Laura Elnitski |
| 2007 | BIBE | An Overview of Bidirectional Promoters. | Mary Qu Yang, Laura Elnitski |
| 2007 | BIBE | Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. | Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng |
| 2007 | BIBE | An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning. | Mary Qu Yang, Jack Y. Yang |
| 2007 | CIBCB | Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches. | Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Zuojie Luo, Jianling Li |
| 2006 | BIBE | IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. | Mary Qu Yang, Jack Y. Yang |
| 2006 | BIBE | Assessing protein function using a combination of supervised and unsupervised learning. | Jack Y. Yang, Mary Qu Yang |
| 2003 | ICANN | Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques. | Jack Y. Yang, Mary Qu Yang, Okan K. Ersoy |