| 2025 | BIBE | An Integrative Deep Learning Model for Drug-Target Interaction Prediction. | Francesco Foder, Salvatore Contino, Antonino Fiannaca, Alfonso Urso, Massimo La Rosa, Roberto Pirrone |
| 2024 | ICANN | A Deep Learning Multi-omics Framework to Combine Microbiome and Metabolome Profiles for Disease Classification. | Andrea Licciardi, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Laura La Paglia |
| 2024 | KES | A deep learning framework for disease classification integrating microbiome and metabolome: explaining multi-omics contribution. | Andrea Licciardi, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Laura La Paglia |
| 2024 | KES | Explainable artificial intelligence models for key-metabolites identification in overweight subjects. | Isabella Mendolia, Antonino Fiannaca, Laura La Paglia, Alfonso Urso, Massimo La Rosa |
| 2022 | EANN | A Gene Ontology-Driven Wide and Deep Learning Architecture for Cell-Type Classification from Single-Cell RNA-seq Data. | Gianmarco Coppola, Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Alfonso Urso, Salvatore Gaglio |
| 2018 | ADBIS | Variable Ranking Feature Selection for the Identification of Nucleosome Related Sequences. | Giosu Lo Bosco, Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso |
| 2013 | EANN | Analysis of DNA Barcode Sequences Using Neural Gas and Spectral Representation. | Antonino Fiannaca, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso |
| 2012 | CIBCB | An ontology design methodology for Knowledge-Based systems with application to bioinformatics. | Antonino Fiannaca, Massimo La Rosa, Salvatore Gaglio |
| 2012 | CISIS | An Intelligent System for Building Bioinformatics Workflows. | Antonino Fiannaca, Salvatore Gaglio, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso |
| 2008 | KES | Comparison of Genomic Sequences Clustering Using Normalized Compression Distance and Evolutionary Distance. | Massimo La Rosa, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio |
| 2007 | IDA | Soft Topographic Map for Clustering and Classification of Bacteria. | Massimo La Rosa, Giuseppe Di Fatta, Salvatore Gaglio, Giovanni M. Giammanco, Riccardo Rizzo, Alfonso Urso |