| 2019 | USENIX | Everyone Loves File: File Storage Service (FSS) in Oracle Cloud Infrastructure. | Bradley C. Kuszmaul, Matteo Frigo, Justin Mazzola Paluska, Alexander (Sasha) Sandler |
| 2009 | SPAA | Parallel sparse matrix-vector and matrix-transpose-vector multiplication using compressed sparse blocks. | Aydin Bulu, Jeremy T. Fineman, Matteo Frigo, John R. Gilbert, Charles E. Leiserson |
| 2009 | SPAA | Reducers and other Cilk++ hyperobjects. | Matteo Frigo, Pablo Halpern, Charles E. Leiserson, Stephen Lewin-Berlin |
| 2007 | ISSAC | Multithreaded programming in Cilk. | Matteo Frigo |
| 2006 | SPAA | The cache complexity of multithreaded cache oblivious algorithms. | Matteo Frigo, Volker Strumpen |
| 2005 | ICS | Cache oblivious stencil computations. | Matteo Frigo, Volker Strumpen |
| 1999 | FOCS | Cache-Oblivious Algorithms. | Matteo Frigo, Charles E. Leiserson, Harald Prokop, Sridhar Ramachandran |
| 1999 | PLDI | A Fast Fourier Transform Compiler. | Matteo Frigo |
| 1999 | PLDI | A fast Fourier transform compiler (with retrospective) | Matteo Frigo |
| 1998 | ICASSP | FFTW: an adaptive software architecture for the FFT. | Matteo Frigo, Steven G. Johnson |
| 1998 | PLDI | The Implementation of the Cilk-5 Multithreaded Language. | Matteo Frigo, Charles E. Leiserson, Keith H. Randall |
| 1998 | SPAA | Computation-Centric Memory Models. | Matteo Frigo, Victor Luchangco |
| 1996 | SPAA | An Analysis of Dag-Consistent Distributed Shared-Memory Algorithms. | Robert D. Blumofe, Matteo Frigo, Christopher F. Joerg, Charles E. Leiserson, Keith H. Randall |