| 2013 | DocEng | Identifying Change Patterns in Software History. | Jason Dagit, Matthew J. Sottile |
| 2013 | PADS | Semi-automatic extraction of software skeletons for benchmarking large-scale parallel applications. | Matthew J. Sottile, Amruth Rudraiah Dakshinamurthy, Gilbert Hendry, Damian Dechev |
| 2012 | EuroPar | A Type-Based Approach to Separating Protocol from Application Logic - A Case Study in Hybrid Computer Programming. | Geoffrey C. Hulette, Matthew J. Sottile, Allen D. Malony |
| 2012 | GPCE | Composing typemaps in Twig. | Geoffrey C. Hulette, Matthew J. Sottile, Allen D. Malony |
| 2010 | ICISP | Unsupervised Segmentation for Inflammation Detection in Histopathology Images. | Kristine A. Thomas, Matthew J. Sottile, Carolyn M. Salafia |
| 2009 | ICCS | An Open Domain-Extensible Environment for Simulation-Based Scientific Investigation (ODESSI). | Adnan Salman, Allen D. Malony, Matthew J. Sottile |
| 2009 | SC | Workflow representation and runtime based on lazy functional streams. | Matthew J. Sottile, Geoffrey C. Hulette, Allen D. Malony |
| 2007 | EuroPar | Untitled record | Aroon Nataraj, Matthew J. Sottile, Alan Morris, Allen D. Malony, Sameer Shende |
| 2007 | SC | The ghost in the machine: observing the effects of kernel operation on parallel application performance. | Aroon Nataraj, Alan Morris, Allen D. Malony, Matthew J. Sottile, Peter H. Beckman |
| 2006 | ICCS | Co-Array Collectives: Refined Semantics for Co-Array Fortran. | Matthew J. Sottile, Craig Edward Rasmussen, Richard L. Graham |
| 2004 | CLUSTER | Analysis of microbenchmarks for performance tuning of clusters. | Matthew J. Sottile, Ronald G. Minnich |
| 2004 | EuroPar | Co-array Python: A Parallel Extension to the Python Language. | Craig Edward Rasmussen, Matthew J. Sottile, Jarek Nieplocha, Robert W. Numrich, Eric Jones |
| 2002 | CLUSTER | Supermon: A High-Speed Cluster Monitoring System. | Matthew J. Sottile, Ronald G. Minnich |
| 1999 | EuroPar | INTERLACE: An Interoperation and Linking Architecture for Computational Engines. | Matthew J. Sottile, Allen D. Malony |
| 1998 | SC | A Prototype Notebook-Based Environment for Computational Tools Computational Tools. | Jenifer L. Skidmore, Matthew J. Sottile, Janice E. Cuny, Allen D. Malony |