| 2021 | WCAE | Using Logisim-evolution for Teaching Datapath and Control. | Mehmet Kayaalp |
| 2020 | AMIA | NLM-Scrubber - a Software Application for Clinical Text De-Identification. | Mehmet Kayaalp, Ming Way, Pamela Sagan |
| 2019 | AMIA | The Promise and Perils of Pseudonymization. | Mehmet Kayaalp |
| 2018 | AMIA | Complete Patient Privacy via Comprehensive Privacy for All. | Mehmet Kayaalp |
| 2017 | AMIA | Modes of De-identification. | Mehmet Kayaalp |
| 2017 | DAC | RIC: Relaxed Inclusion Caches for Mitigating LLC Side-Channel Attacks. | Mehmet Kayaalp, Khaled N. Khasawneh, Hodjat Asghari Esfeden, Jesse Elwell, Nael B. Abu-Ghazaleh, Dmitry V. Ponomarev, Aamer Jaleel |
| 2017 | DSN | ContainerLeaks: Emerging Security Threats of Information Leakages in Container Clouds. | Xing Gao, Zhongshu Gu, Mehmet Kayaalp, Dimitrios Pendarakis, Haining Wang |
| 2016 | DAC | A high-resolution side-channel attack on last-level cache. | Mehmet Kayaalp, Nael B. Abu-Ghazaleh, Dmitry V. Ponomarev, Aamer Jaleel |
| 2015 | AMIA | An Easy-to-Use Clinical Text De-identification Tool for Clinical Scientists: NLM Scrubber. | Mehmet Kayaalp, Allen C. Browne, Zeyno A. Dodd, Pamela Sagan, Clement J. McDonald |
| 2015 | AMIA | Challenges and Insights in Using HIPAA Privacy Rule for Clinical Text Annotation. | Mehmet Kayaalp, Allen C. Browne, Pamela Sagan, Tyne McGee, Clement J. McDonald |
| 2015 | AMIA | State of the Art of Clinical Narrative Report De-Identification and Its Future. | zlem Uzuner, John S. Aberdeen, Stphane M. Meystre, Mehmet Kayaalp |
| 2014 | AMIA | Piloting a Deceased Subject Integrated Data Repository and Protecting Privacy of Relatives. | Vojtech Huser, Mehmet Kayaalp, Zeyno A. Dodd, James J. Cimino |
| 2014 | AMIA | De-identification of Address, Date, and Alphanumeric Identifiers in Narrative Clinical Reports. | Mehmet Kayaalp, Allen C. Browne, Zeyno A. Dodd, Pamela Sagan, Clement J. McDonald |
| 2014 | AMIA | Visualization of Patient Prescription History Data in Emergency Care. | Selcuk Ozturk, Mehmet Kayaalp, Clement J. McDonald |
| 2013 | HPCA | SCRAP: Architecture for signature-based protection from Code Reuse Attacks. | Mehmet Kayaalp, Timothy Schmitt, Junaid Nomani, Dmitry Ponomarev, Nael B. Abu-Ghazaleh |
| 2012 | DSD | Improving the Soft Error Resilience of the Register Files Using SRAM Bitcells with Built-In Comparators. | Mehmet Kayaalp, Fahrettin Koc, Oguz Ergin |
| 2012 | DSD | Exploiting Bus Level and Bit Level Inactivity for Preventing Wire Degradation due to Electromigration. | Mehmet Kayaalp, Fahrettin Koc, Oguz Ergin |
| 2012 | ISCA | Branch regulation: Low-overhead protection from code reuse attacks. | Mehmet Kayaalp, Meltem Ozsoy, Nael B. Abu-Ghazaleh, Dmitry Ponomarev |
| 2010 | ICCD | Dynamic register file partitioning in superscalar microprocessors for energy efficiency. | Meltem Ozsoy, Yusuf Onur Koberber, Mehmet Kayaalp, Oguz Ergin |
| 2008 | AMIA | Biological Entity Recognition with Conditional Random Fields. | Ying He, Mehmet Kayaalp |
| 2006 | AMIA | Interpretation of Data and Identification of Information are Sine Qua Non for Modern Digital Information Services. | Ying He, Mehmet Kayaalp |
| 2005 | AMIA | Semi-Automatic Indexing of Full Text Biomedical Articles. | Clifford W. Gay, Mehmet Kayaalp, Alan R. Aronson |
| 2005 | AMIA | Why Do We Need Probabilistic Approaches to Ontologies and the Associated Data? | Mehmet Kayaalp |
| 2002 | AMIA | Creating a Software Tool for the Clinical Researcher - the IPS System. | Bruce G. Buchanan, Wendy W. Chapman, Gregory F. Cooper, Paul Hanbury, Mehmet Kayaalp, Manoj Ramachandran, Melissa I. Saul |
| 2002 | UAI | A Bayesian Network Scoring Metic that Is Based on Globally Uniform Parameter Priors. | Mehmet Kayaalp, Gregory F. Cooper |
| 2001 | AISTATS | Predicting with Variables Constructed from Temporal Sequences. | Mehmet Kayaalp, Gregory F. Cooper, Gilles Clermont |
| 2001 | AMIA | IPS: A System That Uses Machine Learning to Help Locate Patient Records for Clinical Research. | Gregory F. Cooper, Bruce G. Buchanan, Wendy W. Chapman, Paul Hanbury, Mehmet Kayaalp, Melissa I. Saul |
| 2000 | AMIA | Predicting ICU mortality: a comparison of stationary and nonstationary temporal models. | Mehmet Kayaalp, Gregory F. Cooper, Gilles Clermont |
| 1999 | AMIA | Identifying patient subgroups with simple Bayes'. | John M. Aronis, Gregory F. Cooper, Mehmet Kayaalp, Bruce G. Buchanan |
| 1998 | AMIA | Using computer modeling to help identify patient subgroups in clinical data repositories. | Gregory F. Cooper, Bruce G. Buchanan, Mehmet Kayaalp, Melissa I. Saul, John K. Vries |
| 1997 | CoNLL | A Statistical Decision Making Method: A Case Study on Prepositional Phrase Attachment. | Mehmet Kayaalp, Ted Pedersen, Rebecca F. Bruce |
| 1996 | AAAI | Significant Lexical Relationships. | Ted Pedersen, Mehmet Kayaalp, Rebecca F. Bruce |