| 2025 | KDD | ArnoldiGCL: Graph Contrastive Learning via Learnable Arnoldi-Based Guided Spectral Chebyshev Polynomial Filters. | Mustafa Coskun, Abdelkader Baggag, Mehmet Koyutrk |
| 2021 | AAAI | Spatiotemporal Graph Neural Network for Performance Prediction of Photovoltaic Power Systems. | Ahmad Maroof Karimi, Yinghui Wu, Mehmet Koyutrk, Roger H. French |
| 2021 | PSB | Co-occurrence Patterns of Intimate Partner Violence. | Ahmet Mert Hacialiefendioglu, Serhan Yilmaz, Mehmet Koyutrk, Gunnur Karakurt |
| 2017 | PSB | Network Map of Adverse Health Effects Among Victims of Intimate Partner Violence. | Kathleen Whiting, Larry Y. Liu, Mehmet Koyutrk, Gunnur Karakurt |
| 2016 | KDD | Efficient Processing of Network Proximity Queries via Chebyshev Acceleration. | Mustafa Coskun, Ananth Grama, Mehmet Koyutrk |
| 2015 | ICDM | Link Prediction in Large Networks by Comparing the Global View of Nodes in the Network. | Mustafa Coskun, Mehmet Koyutrk |
| 2013 | PSB | Session introduction. | Grkan Bebek, Mehmet Koyutrk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance |
| 2011 | PSB | Session Introduction. | Grkan Bebek, Mehmet Koyutrk, Mark R. Chance, Nathan D. Price |
| 2011 | PSB | Systems Biology Analyses of Gene Expression and Genome Wide Association Study Data in Obstructive Sleep Apnea. | Yu Liu, Sanjay R. Patel, Rod K. Nibbe, Sean Maxwell, Salim A. Chowdhury, Mehmet Koyutrk, Xiaofeng Zhu, Emma Larkin, Sarah Buxbaum, Naresh Punjabi, Sina Gharib, Susan Redline, Mark R. Chance |
| 2011 | RECOMB | Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks. | Sinan Erten, Grkan Bebek, Mehmet Koyutrk |
| 2010 | PSB | Identification of Coordinately Dysregulated Subnetworks in Complex Phenotypes. | Salim A. Chowdhury, Mehmet Koyutrk |
| 2010 | PSB | COKGEN: A Software for the Identification of Rare Copy Number Variation from SNP Microarrays. | Gkhan Yavas, Mehmet Koyutrk, Z. Meral zsoyoglu, Meetha P. Gould, Thomas LaFramboise |
| 2010 | RECOMB | Subnetwork State Functions Define Dysregulated Subnetworks in Cancer. | Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutrk |
| 2008 | ECCB | Functional coherence in domain interaction networks. | Jayesh Pandey, Mehmet Koyutrk, Shankar Subramaniam, Ananth Grama |
| 2008 | PSB | Annotating Pathways of Interaction Networks. | Jayesh Pandey, Mehmet Koyutrk, Wojciech Szpankowski, Ananth Grama |
| 2008 | SAC | PHALANX: a graph-theoretic framework for test case prioritization. | Murali Krishna Ramanathan, Mehmet Koyutrk, Ananth Grama, Suresh Jagannathan |
| 2007 | ISMB | Functional annotation of regulatory pathways. | Jayesh Pandey, Mehmet Koyutrk, Yohan Kim, Wojciech Szpankowski, Shankar Subramaniam, Ananth Grama |
| 2006 | RECOMB | Assessing Significance of Connectivity and Conservation in Protein Interaction Networks. | Mehmet Koyutrk, Ananth Grama, Wojciech Szpankowski |
| 2005 | RECOMB | Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution. | Mehmet Koyutrk, Ananth Grama, Wojciech Szpankowski |
| 2005 | SECON | Redundant reader elimination in RFID systems. | Bogdan Carbunar, Murali Krishna Ramanathan, Mehmet Koyutrk, Christoph Hoffmann, Ananth Grama |
| 2004 | ISMB | An efficient algorithm for detecting frequent subgraphs in biological networks. | Mehmet Koyutrk, Ananth Grama, Wojciech Szpankowski |
| 2004 | SDM | Conquest: A Distributed Tool for Constructing Summaries of High-Dimensional Discrete Attribute Data Sets. | Jie Chi, Mehmet Koyutrk, Ananth Grama |
| 2003 | KDD | PROXIMUS: a framework for analyzing very high dimensional discrete-attributed datasets. | Mehmet Koyutrk, Ananth Grama |