| 2012 | ICDM | Learning Heterogeneous Similarity Measures for Hybrid-Recommendations in Meta-Mining. | Phong Nguyen, Jun Wang, Melanie Hilario, Alexandros Kalousis |
| 2010 | PAKDD | Adaptive Matching Based Kernels for Labelled Graphs. | Adam Woznica, Alexandros Kalousis, Melanie Hilario |
| 2008 | SDM | Feature Selection with the logRatio Kernel. | Julien Prados, Alexandros Kalousis, Melanie Hilario |
| 2007 | AINA | Learning Relations and Information Extraction Rules for Protein Annotation. | Jee-Hyub Kim, Melanie Hilario |
| 2007 | ICML | Learning to combine distances for complex representations. | Adam Woznica, Alexandros Kalousis, Melanie Hilario |
| 2007 | ISMB | Learning to extract relations for protein annotation. | Jee-Hyub Kim, Alex L. Mitchell, Teresa K. Attwood, Melanie Hilario |
| 2006 | CBMS | On Preprocessing of SELDI-MS Data and its Evaluation. | Julien Prados, Alexandros Kalousis, Melanie Hilario |
| 2006 | ICDM | Distances and (Indefinite) Kernels for Sets of Objects. | Adam Woznica, Alexandros Kalousis, Melanie Hilario |
| 2006 | PAKDD | Kernels on Lists and Sets over Relational Algebra: An Application to Classification of Protein Fingerprints. | Adam Woznica, Alexandros Kalousis, Melanie Hilario |
| 2005 | CICLING | Learning Information Extraction Rules for Protein Annotation from Unannotated Corpora. | Jee-Hyub Kim, Melanie Hilario |
| 2005 | FlAIRS | Model Selection for Support Vector Classifiers via Direct Simplex Search. | Gilles Cohen, Patrick Ruch, Melanie Hilario |
| 2005 | ICDM | Stability of Feature Selection Algorithms. | Alexandros Kalousis, Julien Prados, Melanie Hilario |
| 2005 | PAKDD | Kernels over Relational Algebra Structures. | Adam Woznica, Alexandros Kalousis, Melanie Hilario |
| 2004 | ICTAI | Distilling Classification Models from Cross Validation Runs: An Application to Mass Spectrometry. | Alexandros Kalousis, Julien Prados, Jean-Charles Sanchez, Laure Allard, Melanie Hilario |
| 2004 | SSPR | One-Class Support Vector Machines with a Conformal Kernel. A Case Study in Handling Class Imbalance. | Gilles Cohen, Melanie Hilario, Christian Pellegrini |
| 2003 | ICML | Representational Issues in Meta-Learning. | Alexandros Kalousis, Melanie Hilario |
| 2002 | DIS | Model Complexity and Algorithm Selection in Classification. | Melanie Hilario |
| 2001 | PAKDD | Feature Selection for Meta-learning. | Alexandros Kalousis, Melanie Hilario |
| 2000 | ICTAI | Model selection via meta-learning: a comparative study. | Alexandros Kalousis, Melanie Hilario |
| 1997 | ICDAR | An Architecture for Musical Score Recognition using High-Level Domain Knowledge. | Marc Vuilleumier Stckelberg, Christian Pellegrini, Melanie Hilario |
| 1997 | ICTAI | A Metalevel Architecture for Knowledge-Based Neural Network Design. | Melanie Hilario, Ahmed Rida, Christian Pellegrini |
| 1997 | IWANN | The Use of Prior Knowledge in Neural Network Configuration and Training. | Melanie Hilario, Ahmed Rida |
| 1995 | ESANN | Neurosymbolic integration: unified versus hybrid approaches. | Melanie Hilario, Yannick Lallement, Frdric Alexandre |