| 2016 | SOFSEM | Aspect, Rich, and Anemic Domain Models in Enterprise Information Systems. | Karel Cemus, Toms Cern, Lubos Matl, Michael J. Donahoo |
| 2016 | SOFSEM | Survey on Concern Separation in Service Integration. | Toms Cern, Michael J. Donahoo |
| 2015 | SAC | Effective manycast messaging for Kademlia network. | Lubos Matl, Toms Cern, Michael J. Donahoo |
| 2014 | FedCSIS | Efficient Description and Cache Performance in Aspect-Oriented User Interface Design. | Toms Cern, Miroslav Macik, Michael J. Donahoo, Jan Janousek |
| 2012 | SOFSEM | Towards a Smart, Self-scaling Cooperative Web Cache. | Toms Cern, Petr Praus, Slvka Jaromersk, Lubos Matl, Michael J. Donahoo |
| 2001 | CIKM | Scaling Replica Maintenance In Intermittently Synchronized Mobile Databases. | Wai Gen Yee, Edward Omiecinski, Michael J. Donahoo, Shamkant B. Navathe |
| 2001 | INFOCOM | Scalable Multicast Representative Member Selection. | Michael J. Donahoo, Sunila R. Ainapure |
| 2000 | CIKM | A Framework for Designing Update Objects to Improve Server Scalability in Intermittently Synchronized Databases. | Wai Gen Yee, Michael J. Donahoo, Shamkant B. Navathe |
| 1999 | INFOCOM | Multiple-Channel Multicast Scheduling for Scalabel Bulk-Data Transport. | Michael J. Donahoo, Mostafa H. Ammar, Ellen W. Zegura |
| 1998 | ICDE | Grouping Techniques for Update Propagation in Intermittently Connected Databases. | Sameer Mahajan, Michael J. Donahoo, Shamkant B. Navathe, Mostafa H. Ammar, Sanjoy Malik |
| 1997 | ISMIS | From Data to Knowledge: Method-Specific Transformations. | Michael J. Donahoo, J. William Murdock, Ashok K. Goel, Shamkant B. Navathe, Edward Omiecinski |
| 1995 | ICCCN | Core selection methods for multicast routing. | Kenneth L. Calvert, Ellen W. Zegura, Michael J. Donahoo |