| 2011 | RECOMB | A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription. | Sooraj KuttyKrishnan, Jeffrey Sabina, Laura Langton, Mark Johnston, Michael R. Brent |
| 2009 | ICTAI | Gradient-Based Feature Selection for Conditional Random Fields and its Applications in Computational Genetics. | Minmin Chen, Yixin Chen, Michael R. Brent, Aaron E. Tenney |
| 2009 | KDD | Constrained optimization for validation-guided conditional random field learning. | Minmin Chen, Yixin Chen, Michael R. Brent, Aaron E. Tenney |
| 2008 | AAAI | CRF-OPT: An Efficient High-Quality Conditional Random Field Solver. | Minmin Chen, Yixin Chen, Michael R. Brent |
| 2005 | RECOMB | Using Multiple Alignments to Improve Gene Prediction. | Samuel S. Gross, Michael R. Brent |
| 2001 | ACL | Chinese Text Segmentation With MBDP-1: Making the Most of Training Corpora. | Michael R. Brent, Xiaopeng Tao |
| 2001 | ACL | A Bayesian Model for Morpheme and Paradigm Identification. | Matthew G. Snover, Michael R. Brent |
| 2001 | ISMB | Integrating genomic homology into gene structure prediction. | Ian Korf, Paul Flicek, Daniel Duan, Michael R. Brent |
| 1991 | ACL | Automatic Acquisition of Subcategorization Frames from Untagged Text. | Michael R. Brent |
| 1991 | EACL | Automatic Semantic Classification Of Verbs From Their Syntactic Contexts: An Implemented Classifier For Stativity. | Michael R. Brent |
| 1991 | NAACL | Automatic Acquisition of Subcategorization Frames from Tagged Text. | Michael R. Brent, Robert C. Berwick |
| 1990 | ACL | A Simplified Theory of Tense Representations and Constraints on their Composition. | Michael R. Brent |