| 2023 | WACV | DSFormer: A Dual-domain Self-supervised Transformer for Accelerated Multi-contrast MRI Reconstruction. | Bo Zhou, Neel Dey, Jo Schlemper, Seyed Sadegh Mohseni Salehi, Chi Liu, James S. Duncan, Michal Sofka |
| 2022 | MICCAI | ContraReg: Contrastive Learning of Multi-modality Unsupervised Deformable Image Registration. | Neel Dey, Jo Schlemper, Seyed Sadegh Mohseni Salehi, Bo Zhou, Guido Gerig, Michal Sofka |
| 2019 | MICCAI | Straight to the Point: Reinforcement Learning for User Guidance in Ultrasound. | Fausto Milletari, Vighnesh Birodkar, Michal Sofka |
| 2019 | MICCAI | Nonuniform Variational Network: Deep Learning for Accelerated Nonuniform MR Image Reconstruction. | Jo Schlemper, Seyed Sadegh Mohseni Salehi, Prantik Kundu, Carole Lazarus, Hadrien Dyvorne, Daniel Rueckert, Michal Sofka |
| 2017 | MICCAI | Integrating Statistical Prior Knowledge into Convolutional Neural Networks. | Fausto Milletari, Alex Rothberg, Jimmy Jia, Michal Sofka |
| 2017 | MICCAI | Fully Convolutional Regression Network for Accurate Detection of Measurement Points. | Michal Sofka, Fausto Milletari, Jimmy Jia, Alex Rothberg |
| 2016 | ECAI | Learning Invariant Representation for Malicious Network Traffic Detection. | Karel Bartos, Michal Sofka, Vojtech Franc |
| 2014 | MICCAI | Lung Segmentation from CT with Severe Pathologies Using Anatomical Constraints. | Neil Birkbeck, Timo Kohlberger, Jingdan Zhang, Michal Sofka, Jens N. Kaftan, Dorin Comaniciu, Shaohua Kevin Zhou |
| 2014 | MICCAI | Segmentation of Multiple Knee Bones from CT for Orthopedic Knee Surgery Planning. | Dijia Wu, Michal Sofka, Neil Birkbeck, Shaohua Kevin Zhou |
| 2013 | MICCAI | IntellEditS: Intelligent Learning-Based Editor of Segmentations. | Adam P. Harrison, Neil Birkbeck, Michal Sofka |
| 2013 | MICCAI | Automatic Nuchal Translucency Measurement from Ultrasonography. | Jin Hyeong Park, Michal Sofka, SunMi Lee, Daeyoung Kim, Shaohua Kevin Zhou |
| 2011 | CVPR | Fast boosting trees for classification, pose detection, and boundary detection on a GPU. | Neil Birkbeck, Michal Sofka, Shaohua Kevin Zhou |
| 2011 | MICCAI | Automatic Multi-organ Segmentation Using Learning-Based Segmentation and Level Set Optimization. | Timo Kohlberger, Michal Sofka, Jingdan Zhang, Neil Birkbeck, Jens Wetzl, Jens N. Kaftan, Jrme Declerck, Shaohua Kevin Zhou |
| 2011 | MICCAI | Multi-stage Learning for Robust Lung Segmentation in Challenging CT Volumes. | Michal Sofka, Jens Wetzl, Neil Birkbeck, Jingdan Zhang, Timo Kohlberger, Jens N. Kaftan, Jrme Declerck, Shaohua Kevin Zhou |
| 2011 | MICCAI | Automatic Contrast Phase Estimation in CT Volumes. | Michal Sofka, Dijia Wu, Michael Shling, David Liu, Christian Tietjen, Grzegorz Soza, Shaohua Kevin Zhou |
| 2010 | CVPR | Multiple object detection by sequential monte carlo and Hierarchical Detection Network. | Michal Sofka, Jingdan Zhang, Shaohua Kevin Zhou, Dorin Comaniciu |
| 2009 | BIBE | Vascular Tree Construction with Anatomical Realism for Retinal Images. | Kai-Shung Lin, Chia-Ling Tsai, Michal Sofka, Chih-Hsiangng Tsai, Shih-Jen Chen, Wei-Yang Lin |
| 2008 | AVSS | Commentary Paper 2 on "Robust Unattended and Stolen Object Detection by Fusing Simple Algorithms". | Michal Sofka |
| 2008 | AVSS | Commentary Paper 2 on "On Stable Dynamic Background Generation Technique Using Gaussian Mixture Models for Robust Object Detection'". | Michal Sofka |
| 2008 | AVSS | Commentary Paper on "Shadow Removal in Indoor Scenes". | Michal Sofka |
| 2008 | MICCAI | Location Registration and Recognition (LRR) for Longitudinal Evaluation of Corresponding Regions in CT Volumes. | Michal Sofka, Charles V. Stewart |
| 2007 | CVPR | Keypoint Descriptors for Matching Across Multiple Image Modalities and Non-linear Intensity Variations. | Avi Kelman, Michal Sofka, Charles V. Stewart |
| 2007 | CVPR | Simultaneous Covariance Driven Correspondence (CDC) and Transformation Estimation in the Expectation Maximization Framework. | Michal Sofka, Gehua Yang, Charles V. Stewart |
| 2006 | ICVS | Automatic robust image registration system: Initialization, estimation, and decision. | Gehua Yang, Charles V. Stewart, Michal Sofka, Chia-Ling Tsai |
| 2006 | SMC | A Correspondence-Based Software Toolkit for Image Registration. | Chia-Ling Tsai, Charles V. Stewart, A. G. Amitha Perera, Ying-Lin Lee, Gehua Yang, Michal Sofka |