| 2010 | ICANN | Multilinear Decomposition and Topographic Mapping of Binary Tensors. | Jakub Mazgut, Peter Tio, Mikael Bodn, Hong Yan |
| 2009 | CIBCB | Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes. | Isye Arieshanti, Mikael Bodn, Stefan Maetschke, Fabian A. Buske |
| 2008 | APBC | Predicting Nucleolar Proteins Using Support-Vector Machines. | Mikael Bodn |
| 2007 | CIBCB | A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins. | Stefan Maetschke, Marcus Gallagher, Mikael Bodn |
| 2006 | CEC | Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathway. | Mikael Bodn, John Hawkins |
| 2005 | APBC | Detecting residues in targeting peptides. | Mikael Bodn, John Hawkins |
| 2005 | APBC | BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. | Stefan Maetschke, Michael Towsey, Mikael Bodn |
| 2005 | CIBCB | Predicting Structural Disruption of Proteins Caused by Crossover (based on Amino Acid Sequence). | Denis C. Bauer, Mikael Bodn, Ricarda Thier, Zheng Yuan |
| 2005 | CIBCB | Predicting Peroxisomal Proteins. | John Hawkins, Mikael Bodn |
| 2005 | CIBCB | Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming. | Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikael Bodn |
| 2005 | IDEAL | Exploiting Sequence Dependencies in the Prediction of Peroxisomal Proteins. | Mark Wakabayashi, John Hawkins, Stefan Maetschke, Mikael Bodn |
| 2003 | CEC | Using evolutionary noise to improve prediction of rapidly evolving targeting peptides. | Mikael Bodn |
| 2002 | ESANN | Generalization by structural properties from sparse nested symbolic data. | Mikael Bodn |
| 2000 | GECCO | Evolving context-free language predictors. | Mikael Bodn, Henrik Jacobsson, Tom Ziemke |
| 1996 | ICANN | A Connectionist Variation of Inheritance. | Mikael Bodn |