| 2025 | WACV | Sli2Vol+: Segmenting 3D Medical Images Based on an Object Estimation Guided Correspondence Flow Network. | Delin An, Pengfei Gu, Milan Sonka, Chaoli Wang, Danny Z. Chen |
| 2024 | WACV | PHG-Net: Persistent Homology Guided Medical Image Classification | Yaopeng Peng, Hongxiao Wang, Milan Sonka, Danny Z. Chen |
| 2023 | ACSSC | Trust, but Verify: Robust Image Segmentation using Deep Learning. | Fahim Ahmed Zaman, Xiaodong Wu, Weiyu Xu, Milan Sonka, Raghuraman Mudumbai |
| 2023 | ICML | Provable Multi-instance Deep AUC Maximization with Stochastic Pooling. | Dixian Zhu, Bokun Wang, Zhi Chen, Yaxing Wang, Milan Sonka, Xiaodong Wu, Tianbao Yang |
| 2021 | ICCV | Large-scale Robust Deep AUC Maximization: A New Surrogate Loss and Empirical Studies on Medical Image Classification. | Zhuoning Yuan, Yan Yan, Milan Sonka, Tianbao Yang |
| 2017 | CVPR | Efficient Optimization for Hierarchically-Structured Interacting Segments (HINTS). | Hossam N. Isack, Olga Veksler, Ipek Oguz, Milan Sonka, Yuri Boykov |
| 2016 | CVPR | Hedgehog Shape Priors for Multi-Object Segmentation. | Hossam N. Isack, Olga Veksler, Milan Sonka, Yuri Boykov |
| 2016 | MICCAI | Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative. | Satyananda Kashyap, Ipek Oguz, Honghai Zhang, Milan Sonka |
| 2016 | MICCAI | Globally Optimal Label Fusion with Shape Priors. | Ipek Oguz, Satyananda Kashyap, Hongzhi Wang, Paul A. Yushkevich, Milan Sonka |
| 2015 | MICCAI | Prospective Prediction of Thin-Cap Fibroatheromas from Baseline Virtual Histology Intravascular Ultrasound Data. | Ling Zhang, Andreas Wahle, Zhi Chen, John J. Lopez, Tomas Kovarnik, Milan Sonka |
| 2014 | MICCAI | Robust Cortical Thickness Measurement with LOGISMOS-B. | Ipek Oguz, Milan Sonka |
| 2013 | ICASSP | Vessel segmentation in images of optical coherence tomography using shadow information and thickening of Retinal Nerve Fiber Layer. | Rahele Kafieh, Hajar Danesh, Hossein Rabbani, Michael Abramoff, Milan Sonka |
| 2013 | ICASSP | Intra-retinal layer segmentation of optical coherence tomography using diffusion map. | Rahele Kafieh, Hossein Rabbani, Michael Abramoff, Milan Sonka |
| 2011 | CVPR | Feature guided motion artifact reduction with structure-awareness in 4D CT images. | Dongfeng Han, John E. Bayouth, Qi Song, Sudershan Bhatia, Milan Sonka, Xiaodong Wu |
| 2011 | ICASSP | Signal processing in medical imaging and image-guided intervention. | Milan Sonka |
| 2011 | ISAAC | Maximum Weight Digital Regions Decomposable into Digital Star-Shaped Regions. | Matt Gibson, Dongfeng Han, Milan Sonka, Xiaodong Wu |
| 2011 | MICCAI | Faster Segmentation Algorithm for Optical Coherence Tomography Images with Guaranteed Smoothness. | Lei Xu, Branislav Stojkovic, Hu Ding, Qi Song, Xiaodong Wu, Milan Sonka, Jinhui Xu |
| 2010 | CVPR | Simultaneous searching of globally optimal interacting surfaces with shape priors. | Qi Song, Xiaodong Wu, Yunlong Liu, Milan Sonka, Mona Kathryn Garvin |
| 2010 | ISVC | Multi-scale Topo-morphometric Opening of Arteries and Veins: An Evaluative Study via Pulmonary CT Imaging. | Zhiyun Gao, Colin Holtze, Randall Grout, Milan Sonka, Eric A. Hoffman, Punam K. Saha |
| 2010 | MICCAI | Motion Artifact Reduction in 4D Helical CT: Graph-Based Structure Alignment. | Dongfeng Han, John E. Bayouth, Sudershan Bhatia, Milan Sonka, Xiaodong Wu |
| 2010 | MICCAI | Graph Search with Appearance and Shape Information for 3-D Prostate and Bladder Segmentation. | Qi Song, Yinxiao Liu, Yunlong Liu, Punam K. Saha, Milan Sonka, Xiaodong Wu |
| 2009 | ICCV | Optimal multiple surfaces searching for video/image resizing - a graph-theoretic approach. | Dongfeng Han, Xiaodong Wu, Milan Sonka |
| 2009 | MICCAI | Optimal Graph Search Segmentation Using Arc-Weighted Graph for Simultaneous Surface Detection of Bladder and Prostate. | Qi Song, Xiaodong Wu, Yunlong Liu, Mark Smith, John M. Buatti, Milan Sonka |
| 2008 | CVPR | Globally optimal surface segmentation using regional properties of segmented objects. | Xin Dou, Xiaodong Wu, Andreas Wahle, Milan Sonka |
| 2008 | FAW | Knowledge-Based Approaches to Quantitative Medical Image Analysis and Image-Based Decision Making. | Milan Sonka |
| 2007 | MICCAI | Use of Varying Constraints in Optimal 3-D Graph Search for Segmentation of Macular Optical Coherence Tomography Images. | Mona Haeker, Michael D. Abrmoff, Xiaodong Wu, Randy Kardon, Milan Sonka |
| 2007 | MICCAI | A New Method for Spherical Object Detection and Its Application to Computer Aided Detection of Pulmonary Nodules in CT Images. | Xiangwei Zhang, Jonathan Stoeckel, Matthias Wolf, Pascal Cathier, Geoffrey McLennan, Eric A. Hoffman, Milan Sonka |
| 2006 | BMVC | Automated 4D Segmentation of Aortic Magnetic Resonance Images. | Fei Zhao, Honghai Zhang, Andreas Wahle, Thomas D. Scholz, Milan Sonka |
| 2006 | ECCV | Detection of Connective Tissue Disorders from 3D Aortic MR Images Using Independent Component Analysis. | Michael Sass Hansen, Fei Zhao, Honghai Zhang, Nicholas E. Walker, Andreas Wahle, Thomas D. Scholz, Milan Sonka |
| 2006 | MICCAI | Segmentation of the Surfaces of the Retinal Layer from OCT Images. | Mona Haeker, Michael D. Abrmoff, Randy Kardon, Milan Sonka |
| 2005 | IJCNN | Neural network and principal component analyses of highly variable myocardial mechanical waveforms derived from echocardiographic ultrasound images. | Eileen McMahon, Josef Korinek, Honghai Zhang, Milan Sonka, Armando Manduca, Marek Belohlavek |
| 2005 | ISAAC | The Layered Net Surface Problems in Discrete Geometry and Medical Image Segmentation. | Xiaodong Wu, Danny Z. Chen, Kang Li, Milan Sonka |
| 2005 | MICCAI | Cell Segmentation, Tracking, and Mitosis Detection Using Temporal Context. | Fuxing Yang, Michael A. Mackey, Fiorenza Ianzini, Greg Gallardo, Milan Sonka |
| 2004 | CVPR | Globally Optimal Segmentation of Interacting Surfaces with Geometric Constraints. | Kang Li, Xiaodong Wu, Danny Z. Chen, Milan Sonka |
| 2004 | ECCV | Assessment of Intrathoracic Airway Trees: Methods and In Vivo Validation. | Klmn Palgyi, Juerg Tschirren, Eric A. Hoffman, Milan Sonka |
| 2003 | MICCAI | ICA vs. PCA Active Appearance Models: Application to Cardiac MR Segmentation. | Mehmet zmc, Alejandro F. Frangi, Milan Sonka, Johan H. C. Reiber, Boudewijn P. F. Lelieveldt |
| 2002 | MICCAI | Automated Nomenclature Labeling of the Bronchial Tree in 3D-CT Lung Images. | Hiroko Kitaoka, Yongsup Park, Juerg Tschirren, Joseph M. Reinhardt, Milan Sonka, Geoffrey McLennan, Eric A. Hoffman |
| 2002 | MICCAI | Segmentation, Skeletonization, and Branchpoint Matching - A Fully Automated Quantitative Evaluation of Human Intrathoracic Airway Trees. | Juerg Tschirren, Klmn Palgyi, Joseph M. Reinhardt, Eric A. Hoffman, Milan Sonka |
| 2001 | ICIP | Shape- and appearance-based segmentation of volumetric medical images. | Reinhard Beichel, Steven C. Mitchell, Erich Sorantin, Franz Leberl, A. Ardeshir Goshtasby, Milan Sonka |
| 2001 | MICCAI | Integrated System for Objective Assessment of Global and Regional Lung Structure. | Joseph M. Reinhardt, Junfeng Guo, Li Zhang, D. Bilgen, Shiying Hu, R. Uppaluri, Ryan M. Long, O. I. Saba, Geoffrey McLennan, Milan Sonka, Eric A. Hoffman |
| 1998 | MICCAI | 3-D Fusion of Biplane Angiography and Intravascular Ultrasound for Accurate Visualization and Volumetry. | Andreas Wahle, Guido P. M. Prause, Steven C. DeJong, Milan Sonka |
| 1997 | ICIAP | An Improved Active Shape Model: Handling Occlusion and Outliers. | Nicolae Duta, Milan Sonka |
| 1997 | ICIP | Local Three-Dimensional Shape-Preserving Smoothing without Shrinkage. | Chaohuang Zeng, Milan Sonka |
| 1995 | ICIP | Tree pruning strategy in automated detection of coronary trees in cineangiograms. | Xiangmin Zhang, Steve M. Collins, Milan Sonka |