| 2003 | AMIA | An Analytic Framework for Space-Time Aberrancy Detection in Public Health Surveillance Data. | David L. Buckeridge, Mark A. Musen, Paul Switzer, Monica Crubzy |
| 2003 | AMIA | Protg-2000: An Open-Source Ontology-Development and Knowledge-Acquisition Environment: AMIA 2003 Open Source Expo. | Natalya Fridman Noy, Monica Crubzy, Ray W. Fergerson, Holger Knublauch, Samson W. Tu, Jennifer Vendetti, Mark A. Musen |
| 2003 | AMIA | BioSTORM: A System for Automated Surveillance of Diverse Data Sources. | Martin J. O'Connor, David L. Buckeridge, Michael Choy, Monica Crubzy, Zachary Pincus, Mark A. Musen |
| 2001 | AMIA | Protege-2000: A Plug-in Architecture to Support Knowledge Acquisition, Knowledge Visualization, and the Semantic Web. | Mark A. Musen, Ray W. Fergerson, Natalya Fridman Noy, Monica Crubzy |
| 2000 | EKAW | A Case Study in Using Protg-2000 as a Tool for CommonKADS. | Guus Schreiber, Monica Crubzy, Mark A. Musen |
| 1999 | ICVS | Experience in Integrating Image Processing Programs. | Monique Thonnat, Sabine Moisan, Monica Crubzy |