| 2018 | AMIA | Methods and Tools to Enhance Rigor and Reproducibility of Biomedical Research. | Halil Kilicoglu, Aurlie Nvol, Timothy Clark, Hua Xu, Neil R. Smalheiser |
| 2017 | WSDM | Predicting MeSH Beyond MEDLINE. | Adam K. Kehoe, Vetle I. Torvik, Matthew B. Ross, Neil R. Smalheiser |
| 2015 | AMIA | ClinicalTrials.gov: Adding Value through Informatics. | Vojtech Huser, Alexa T. McCray, Neil R. Smalheiser, Asba Tasneem, Chunhua Weng |
| 2012 | IRI | A framework for entity resolution with efficient blocking. | Liangcai Shu, Can Lin, Weiyi Meng, Yue Han, Clement T. Yu, Neil R. Smalheiser |
| 2007 | SIGIR | Knowledge-intensive conceptual retrieval and passage extraction of biomedical literature. | Wei Zhou, Clement T. Yu, Neil R. Smalheiser, Vetle I. Torvik, Jie Hong |
| 2006 | ICDE | Segmentation of Publication Records of Authors from the Web. | Wei Zhang, Clement T. Yu, Neil R. Smalheiser, Vetle I. Torvik |
| 2005 | ALT | The Arrowsmith Project: 2005 Status Report. | Neil R. Smalheiser |
| 2005 | DIS | The Arrowsmith Project: 2005 Status Report. | Neil R. Smalheiser |
| 2003 | AMIA | A Probabilistic Similarity Metric for Medline Records: A Model for Author Name Disambiguation. | Vetle I. Torvik, Marc Weeber, Don R. Swanson, Neil R. Smalheiser |
| 1996 | KDD | Undiscovered Public Knowledge: A Ten-Year Update. | Don R. Swanson, Neil R. Smalheiser |