| 2023 | EMNLP | Solving the Right Problem is Key for Translational NLP: A Case Study in UMLS Vocabulary Insertion. | Bernal Jimenez Gutierrez, Yuqing Mao, Vinh Nguyen, Kin Wah Fung, Yu Su, Olivier Bodenreider |
| 2022 | WWW | Powering Semantic Analysis with Bio-ontologies. | Olivier Bodenreider |
| 2022 | WWW | Context-Enriched Learning Models for Aligning Biomedical Vocabularies at Scale in the UMLS Metathesaurus. | Vinh Nguyen, Hong Yung Yip, Goonmeet Bajaj, Thilini Wijesiriwardene, Vishesh Javangula, Srinivasan Parthasarathy, Amit P. Sheth, Olivier Bodenreider |
| 2021 | AMIA | Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. | Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman |
| 2021 | AMIA | Can ICD-11 Replace ICD-10-CM for Morbidity Coding in the U.S.? | Kin Wah Fung, Julia Xu, Shannon McConnell-Lamptey, Donna Pickett, Olivier Bodenreider |
| 2021 | WWW | Biomedical Vocabulary Alignment at Scale in the UMLS Metathesaurus. | Vinh Nguyen, Hong Yung Yip, Olivier Bodenreider |
| 2018 | AMIA | Using RxNav for drug analytics - How to interpret obsolete drug identifiers? | Olivier Bodenreider, Lee B. Peters |
| 2018 | AMIA | Historically Comprehensive Medications Metadata for i2b2 Data Warehouses. | Jay Pedersen, Bret J. Gardner, James R. Campbell, Walter S. Campbell, Carol Geary, Lee B. Peters, Olivier Bodenreider, James C. McClay |
| 2018 | AMIA | RxNav-in-a-Box - A locally-installable version of RxNav and related APIs. | Lee B. Peters, Richard Rice, Olivier Bodenreider |
| 2017 | AMIA | RxNorm Concept History Service. | Olivier Bodenreider, Lee B. Peters |
| 2017 | AMIA | RxMix - Use of NLM drug APIs by non-programmers. | Olivier Bodenreider, Lee B. Peters |
| 2017 | AMIA | Mapping U.S. FDA National Drug Codes to Anatomical-Therapeutic-Chemical Classes using RxNorm. | Fabrcio S. P. Kury, Olivier Bodenreider |
| 2017 | AMIA | RxNav 2.0 - A web-based, mobile-responsive RxNorm browser. | Lee B. Peters, Olivier Bodenreider |
| 2017 | AMIA | Identifying Potentially Missing Hierarchical Relations in SNOMED CT based on Lexical Features - Impact of Synonyms and Lexico-syntactic Constraints. | Satyajeet Raje, Olivier Bodenreider |
| 2017 | AMIA | Detecting Adverse Drug Event Safety Signals from MEDLINE Reports: Challenges in Employing Cross-terminology Mapping of MeSH to MedDRA. | Abhivyakti Sawarkar, Alfred Sorbello, Anna Ripple, Olivier Bodenreider |
| 2016 | AMIA | Resources for Analyzing Drug Prescription Datasets. | Olivier Bodenreider, Vojtech Huser, Christian G. Reich |
| 2016 | AMIA | Characterizing the semantic composition of the UMLS Metathesaurus over time. | Olivier Bodenreider, Lee B. Peters |
| 2016 | AMIA | Assessing the potential risk in drug prescriptions during pregnancy. | Ferdinand Dhombres, Vojtech Huser, Laritza M. Rodriguez, Olivier Bodenreider |
| 2016 | AMIA | Exploring the Use of ClinicalTrials.gov Trial Results Data for Pharmacovigilance. | Vojtech Huser, Olivier Bodenreider |
| 2016 | AMIA | NDC Properties in RxNorm. | Lee B. Peters, Olivier Bodenreider |
| 2016 | AMIA | PubMed 'Early Alerts': Towards Better Precision of Literature Searching for Pharmacovigilance Information based on an Assessment of Relevance Feedback. | Anna Ripple, Alfred Sorbello, Shahrukh Haider, Olivier Bodenreider |
| 2015 | AMIA | Navigating between Drug Classes and RxNorm Drugs with RxClass. | Olivier Bodenreider, Lee B. Peters, Thang Nguyen |
| 2015 | AMIA | Finding Similar Drug Classes using RxClass. | Thang Nguyen, Lee B. Peters, Olivier Bodenreider |
| 2015 | AMIA | Approaches to Supporting the Analysis of Historical Medication Datasets with RxNorm. | Lee B. Peters, Olivier Bodenreider |
| 2015 | AMIA | PubMed 'Early Alerts': A Pilot Study to Support Prospective Detection of Emerging Adverse Drug Events. | Alfred Sorbello, Anna Ripple, Olivier Bodenreider |
| 2014 | AMIA | Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index. | Olivier Bodenreider, Laritza Rodriguez |
| 2014 | AMIA | Coverage of Rare Disease Names in Standard Terminologies and Implications for Patients, Providers, and Research. | Kin Wah Fung, Rachel L. Richesson, Olivier Bodenreider |
| 2014 | AMIA | Creating, Maintaining and Publishing Value Sets in the VSAC. | Emir Khatipov, Maureen Madden, Pishing Chiang, Philip Chuang, Duc Nguyen, Ivor D'Souza, Rainer Winnenburg, Olivier Bodenreider, Julia L. Skapik, Robert C. McClure, Steven Emrick |
| 2014 | AMIA | RxClass - Navigating between Drug Classes and RxNorm Drugs. | Thang Nguyen, Lee B. Peters, Olivier Bodenreider |
| 2014 | AMIA | Automatic coding of Free-Text Medication Data recorded by Research Coordinators. | Laritza Rodriguez, Vojtech Huser, Olivier Bodenreider, James J. Cimino |
| 2014 | AMIA | Facilitating Reconciliation of Inter-Annotator Disagreements. | Johann Stan, Olivier Bodenreider, Kin Wah Fung, Dina Demner-Fushman |
| 2014 | AMIA | Desiderata for an authoritative Representation of MeSH in RDF. | Rainer Winnenburg, Olivier Bodenreider |
| 2014 | WWW | Don't like RDF reification?: making statements about statements using singleton property. | Vinh Nguyen, Olivier Bodenreider, Amit P. Sheth |
| 2013 | AMIA | The NLM Value Set Authority Center at 1 year. | Steven Emrick, Duc Nguyen, Pishing Chiang, Philip Chuang, Maureen Madden, Rainer Winnenburg, Robert C. McClure, Ivor D'Souza, Olivier Bodenreider |
| 2013 | AMIA | Network Visualization of UMLS Source Vocabularies using Semantic Groups. | Thai Le, Bastien Rance, Olivier Bodenreider |
| 2013 | AMIA | Displaying Drug Classes in RxNav. | Lee B. Peters, Thang Nguyen, Olivier Bodenreider |
| 2013 | AMIA | Metrics for assessing the quality of value sets in clinical quality measures. | Rainer Winnenburg, Olivier Bodenreider |
| 2012 | AMIA | Quality Assurance in LOINC using Description Logic. | Tomasz Adamusiak, Olivier Bodenreider |
| 2012 | AMIA | RxBatch - Batch Operations for RxNorm and NDF-RT APIs. | Lee B. Peters, Olivier Bodenreider, Thang Nguyen |
| 2012 | AMIA | Issues in Creating and Maintaining Value Sets for Clinical Quality Measures. | Rainer Winnenburg, Olivier Bodenreider |
| 2010 | AAAI | Finding Semantic Inconsistencies in UMLS using Answer Set Programming. | Halit Erdogan, Olivier Bodenreider, Esra Erdem |
| 2010 | SSDBM | Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. | Satya Sanket Sahoo, Olivier Bodenreider, Pascal Hitzler, Amit P. Sheth, Krishnaprasad Thirunarayan |
| 2009 | AMIA | Using SNOMED CT in combination with MedDRA for reporting signal detection and adverse drug reactions reporting. | Olivier Bodenreider |
| 2009 | AMIA | Two approaches to integrating phenotype and clinical information. | Anita Burgun, Fleur Mougin, Olivier Bodenreider |
| 2008 | AMIA | Issues in Mapping LOINC Laboratory Tests to SNOMED CT. | Olivier Bodenreider |
| 2008 | AMIA | Auditing the NCI Thesaurus with Semantic Web Technologies. | Fleur Mougin, Olivier Bodenreider |
| 2008 | AMIA | Using the RxNorm Web Services API for Quality Assurance Purposes. | Lee B. Peters, Olivier Bodenreider |
| 2008 | AMIA | A Framework for Characterizing Drug Information Sources. | Mark Sharp, Olivier Bodenreider, Nina Wacholder |
| 2008 | AMIA | Design and Implementation of a Personal Medication Record - | Kelly Zeng, Olivier Bodenreider, Stuart J. Nelson |
| 2007 | AMIA | Identifying Mismatches in Alignments of Large Anatomical Ontologies. | Songmao Zhang, Olivier Bodenreider |
| 2006 | AMIA | Comparing the Representation of Anatomy in the FMA and SNOMED CT. | Olivier Bodenreider, Songmao Zhang |
| 2006 | AMIA | Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration. | Fleur Mougin, Anita Burgun, Olivier Bodenreider |
| 2006 | AMIA | Besides Precision & Recall: Exploring Alternative Approaches to Evaluating an Automatic Indexing Tool for MEDLINE. | Aurlie Nvol, Kelly Zeng, Olivier Bodenreider |
| 2006 | AMIA | Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches. | Lowell Vizenor, Olivier Bodenreider, Lee B. Peters, Alexa T. McCray |
| 2006 | AMIA | RxNav: A Web Service for Standard Drug Information. | Kelly Zeng, Olivier Bodenreider, John Kilbourne, Stuart J. Nelson |
| 2006 | AMIA | RxNav: Providing Standard Drug Information. | Kelly Zeng, Olivier Bodenreider, John Kilbourne, Stuart J. Nelson |
| 2006 | ICDM | Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. | Francisco Azuaje, Haiying Wang, Huiru Zheng, Olivier Bodenreider, Alban Chesneau |
| 2006 | PSB | Session Introduction. | K. Bretonnel Cohen, Olivier Bodenreider, Lynette Hirschman |
| 2006 | PSB | Session Introduction. | Robert Stevens, Olivier Bodenreider, Yves A. Lussier |
| 2006 | PSB | Experience in Reasoning with the Foundational Model of Anatomy in OWL DL. | Songmao Zhang, Olivier Bodenreider, Christine Golbreich |
| 2005 | AMIA | Of Mice and Men: Aligning Mouse and Human Anatomies. | Olivier Bodenreider, Terry F. Hayamizu, Martin Ringwald, Sherri de Coronado, Songmao Zhang |
| 2005 | AMIA | Classifying diseases with respect to anatomy: a study in SNOMED CT. | Anita Burgun, Olivier Bodenreider, Fleur Mougin |
| 2005 | AMIA | Utilizing the UMLS for Semantic Mapping between Terminologies. | Kin Wah Fung, Olivier Bodenreider |
| 2005 | AMIA | Approaches to Eliminating Cycles in the UMLS Metathesaurus: Nave vs. Formal. | Fleur Mougin, Olivier Bodenreider |
| 2005 | AMIA | RxNav: A Progress Report. | Kelly Zeng, Olivier Bodenreider, Stuart J. Nelson |
| 2005 | AMIA | Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference. | Songmao Zhang, Olivier Bodenreider |
| 2005 | CBMS | An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis. | Haiying Wang, Francisco Azuaje, Olivier Bodenreider |
| 2005 | PSB | Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology. | Olivier Bodenreider, Marc Aubry, Anita Burgun |
| 2005 | PSB | Session Introduction: Biomedical Ontologies. | Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray |
| 2005 | PSB | GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. | Michael N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier |
| 2004 | BIBE | Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study. | Francisco Azuaje, Olivier Bodenreider |
| 2004 | CIBCB | Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships. | Haiying Wang, Francisco Azuaje, Olivier Bodenreider, Joaqun Dopazo |
| 2004 | PSB | Session Introduction. | Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray |
| 2004 | PSB | Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain. | Songmao Zhang, Olivier Bodenreider |
| 2003 | AMIA | Strength in Numbers: Exploring Redundancy in Hierarchical Relations across Biomedical Terminologies. | Olivier Bodenreider |
| 2003 | AMIA | Graphical Visualization and Navigation of Genetic Disease Information. | Olivier Bodenreider, Joyce A. Mitchell |
| 2003 | AMIA | Aligning Representations of Anatomy using Lexical and Structural Methods. | Songmao Zhang, Olivier Bodenreider |
| 2003 | PSB | Biomedical Ontologies - Session Introduction. | Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray |
| 2002 | ACL | Unsupervised, corpus-based method for extending a biomedical terminology. | Olivier Bodenreider, Thomas C. Rindflesch, Anita Burgun |
| 2002 | AMIA | GenNav: Visualizing Gene Ontology as a Graph. | Olivier Bodenreider |
| 2002 | AMIA | Evaluation of the UMLS as a terminology and knowledge resource for biomedical informatics. | Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray |
| 2002 | AMIA | Representation of roles in biomedical ontologies: a case study in functional genomics. | Anita Burgun, Olivier Bodenreider, Franck Le Duff, Fouzia Moussouni, Olivier Loral |
| 2002 | AMIA | The lexical properties of the gene ontology. | Alexa T. McCray, Allen C. Browne, Olivier Bodenreider |
| 2002 | AMIA | From Phenotype to Genotype: Experiences in Navigating the Available Information Resources. | Joyce A. Mitchell, Alexa T. McCray, Olivier Bodenreider |
| 2001 | AMIA | Circular hierarchical relationships in the UMLS: etiology, diagnosis, treatment, complications and prevention. | Olivier Bodenreider |
| 2001 | AMIA | Mapping the UMLS Semantic Network into general ontologies. | Anita Burgun, Olivier Bodenreider |
| 2001 | AMIA | Evaluating UMLS strings for natural language processing. | Alexa T. McCray, Olivier Bodenreider, James D. Malley, Allen C. Browne |
| 2001 | FOIS | Aspects of the taxonomic relation in the biomedical domain. | Anita Burgun, Olivier Bodenreider |
| 2000 | AMIA | The NLM Indexing Initiative. | Alan R. Aronson, Olivier Bodenreider, Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch, W. John Wilbur |
| 2000 | AMIA | Using UMLS semantics for classification purposes. | Olivier Bodenreider |
| 2000 | AMIA | A Semantic Navigation Tool for the UMLS. | Olivier Bodenreider |
| 1999 | AMIA | Automated Assignment of Medical Subject Headings. | Stuart J. Nelson, Alan R. Aronson, Tamas E. Doszkocs, W. John Wilbur, Olivier Bodenreider, H. Florence Chang, James G. Mork, Alexa T. McCray |
| 1998 | AMIA | Beyond synonymy: exploiting the UMLS semantics in mapping vocabularies. | Olivier Bodenreider, Stuart J. Nelson, William T. Hole, H. Florence Chang |