| 2017 | PACT | Islands-of-Cores Approach for Harnessing SMP/NUMA Architectures in Heterogeneous Stencil Computations. | Lukasz Szustak, Roman Wyrzykowski, Ondrej Jakl |
| 2013 | PPAM | Iterative Solution of Singular Systems with Applications. | Radim Blaheta, Ondrej Jakl, Jir Star |
| 2011 | PPAM | Material Parameter Identification with Parallel Processing and Geo-applications. | Radim Blaheta, Rostislav Hrtus, Roman Kohut, Owe Axelsson, Ondrej Jakl |
| 2010 | SYNASC | Role-Based Access Control in Software Services: Theory vs. Practice. | Martin Lason, Ondrej Jakl |
| 2009 | PPAM | GEM - A Platform for Advanced Mathematical Geosimulations. | Radim Blaheta, Ondrej Jakl, Roman Kohut, Jir Star |
| 2007 | PPAM | MPI and OpenMP Computations for Nuclear Waste Deposition Models. | Ondrej Jakl, Roman Kohut, Jir Star |
| 2006 | ISPA | Parallel Thermo-Mechanical Modelling for Nuclear Waste Deposition. | Jir Star, Ondrej Jakl, Roman Kohut |
| 2005 | PPAM | Parallel Schwarz Methods: Algebraic Construction of Coarse Problems, Implementation and Testing. | Radim Blaheta, Petr Byczanski, Ondrej Jakl, Jir Star |
| 2003 | PPAM | Space Decomposition Solvers and Their Performance in PC-Based Parallel Computing Environments. | Radim Blaheta, Ondrej Jakl, Jiri Stary |
| 2002 | ICCS | Parallel High-Performance Computing in Geomechanics with Inner/Outer Iterative Procedures. | Radim Blaheta, Ondrej Jakl, Jiri Stary |
| 2001 | PPAM | Parallel Displacement Decomposition Solvers for Elasticity Problems. | Radim Blaheta, Ondrej Jakl, Jiri Stary |