| 2022 | ECCV | Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images. | Kevin Thandiackal, Boqi Chen, Pushpak Pati, Guillaume Jaume, Drew F. K. Williamson, Maria Gabrani, Orcun Goksel |
| 2022 | MICCAI | Unsupervised Domain Adaptation with Contrastive Learning for OCT Segmentation. | Alvaro Gomariz, Huanxiang Lu, Yun Yvonna Li, Thomas Albrecht, Andreas Maunz, Fethallah Benmansour, Alessandra M. Valcarcel, Jennifer Luu, Daniela Ferrara, Orcun Goksel |
| 2021 | CVPR | Quantifying Explainers of Graph Neural Networks in Computational Pathology. | Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta, Anna Maria Anniciello, Florinda Feroce, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel |
| 2021 | MICCAI | Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs. | Valentin Anklin, Pushpak Pati, Guillaume Jaume, Behzad Bozorgtabar, Antonio Foncubierta-Rodrguez, Jean-Philippe Thiran, Mathilde Sibony, Maria Gabrani, Orcun Goksel |
| 2021 | MICCAI | Content-Preserving Unpaired Translation from Simulated to Realistic Ultrasound Images. | Devavrat Tomar, Lin Zhang, Tiziano Portenier, Orcun Goksel |
| 2020 | MICCAI | Reinforcement Learning of Musculoskeletal Control from Functional Simulations. | Emanuel Joos, Fabien Pan, Orcun Goksel |
| 2020 | MICCAI | HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification. | Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta-Rodrguez, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani |
| 2020 | MICCAI | Deep Image Translation for Enhancing Simulated Ultrasound Images. | Lin Zhang, Tiziano Portenier, Christoph Paulus, Orcun Goksel |
| 2019 | MICCAI | Attenuation Imaging with Pulse-Echo Ultrasound Based on an Acoustic Reflector. | Richard Rau, Ozan Unal, Dieter Schweizer, Valeriy Vishnevskiy, Orcun Goksel |
| 2019 | MICCAI | Deep Variational Networks with Exponential Weighting for Learning Computed Tomography. | Valeriy Vishnevskiy, Richard Rau, Orcun Goksel |
| 2018 | MICCAI | Framework for Fusion of Data- and Model-Based Approaches for Ultrasound Simulation. | Christine Tanner, Rastislav Starkov, Michael Bajka, Orcun Goksel |
| 2018 | MICCAI | A Structure-Aware Convolutional Neural Network for Skin Lesion Classification. | Kevin Thandiackal, Orcun Goksel |
| 2018 | MICCAI | Image Reconstruction via Variational Network for Real-Time Hand-Held Sound-Speed Imaging. | Valeriy Vishnevskiy, Sergio J. Sanabria, Orcun Goksel |
| 2017 | MICCAI | Computational Immunohistochemistry: Recipes for Standardization of Immunostaining. | Nuri Murat Arar, Pushpak Pati, Aditya Kashyap, Anna Fomitcheva Khartchenko, Orcun Goksel, Govind V. Kaigala, Maria Gabrani |
| 2016 | MICCAI | PURE: Panoramic Ultrasound Reconstruction by Seamless Stitching of Volumes. | Barbara Flach, Maxim Makhinya, Orcun Goksel |
| 2016 | MICCAI | Image-Based PSF Estimation for Ultrasound Training Simulation. | Oliver Mattausch, Orcun Goksel |
| 2016 | MICCAI | Graphical Modeling of Ultrasound Propagation in Tissue for Automatic Bone Segmentation. | Firat zdemir, Ece Ozkan, Orcun Goksel |
| 2016 | MICCAI | Hand-Held Sound-Speed Imaging Based on Ultrasound Reflector Delineation. | Sergio J. Sanabria, Orcun Goksel |
| 2016 | MICCAI | 4D Reconstruction of Fetal Heart Ultrasound Images in Presence of Fetal Motion. | Christine Tanner, Barbara Flach, Cline Eggenberger, Oliver Mattausch, Michael Bajka, Orcun Goksel |
| 2016 | MICCAI | Automatic Segmentation of Abdominal MRI Using Selective Sampling and Random Walker. | Janine Thoma, Firat zdemir, Orcun Goksel |
| 2014 | MICCAI | Multi-atlas Segmentation and Landmark Localization in Images with Large Field of View. | Tobias Gass, Gbor Szkely, Orcun Goksel |
| 2014 | MICCAI | Total Variation Regularization of Displacements in Parametric Image Registration. | Valeriy Vishnevskiy, Tobias Gass, Gbor Szkely, Orcun Goksel |
| 2012 | MICCAI | Semi-supervised Segmentation Using Multiple Segmentation Hypotheses from a Single Atlas. | Tobias Gass, Gbor Szkely, Orcun Goksel |
| 2009 | MICCAI | High-Quality Model Generation for Finite Element Simulation of Tissue Deformation. | Orcun Goksel, Septimiu E. Salcudean |
| 2009 | MICCAI | 3D Prostate Segmentation in Ultrasound Images Based on Tapered and Deformed Ellipsoids. | Seyedeh Sara Mahdavi, William J. Morris, Ingrid Spadinger, Nick Chng, Orcun Goksel, Septimiu E. Salcudean |
| 2007 | MICCAI | Real-Time Synthesis of Image Slices in Deformed Tissue from Nominal Volume Images. | Orcun Goksel, Septimiu E. Salcudean |
| 2006 | MICCAI | A Comparison of Needle Bending Models. | Ehsan Dehghan, Orcun Goksel, Septimiu E. Salcudean |
| 2005 | MICCAI | 3D Needle-Tissue Interaction Simulation for Prostate Brachytherapy. | Orcun Goksel, Septimiu E. Salcudean, Simon P. DiMaio, Robert Rohling, William James Morris |