| 2017 | MICCAI | Learning a Sparse Database for Patch-Based Medical Image Segmentation. | Moti Freiman, Hannes Nickisch, Holger Schmitt, Pl Maurovich-Horvat, Patrick Donnelly, Mani Vembar, Liran Goshen |
| 2015 | CCGRID | Confuga: Scalable Data Intensive Computing for POSIX Workflows. | Patrick Donnelly, Nicholas L. Hazekamp, Douglas Thain |
| 2015 | CLUSTER | Scaling Data Intensive Physics Applications to 10k Cores on Non-dedicated Clusters with Lobster. | Anna Woodard, Matthias Wolf, Charles Mueller, Nil Valls, Ben Tovar, Patrick Donnelly, Peter Ivie, Kenyi Hurtado Anampa, Paul R. Brenner, Douglas Thain, Kevin Lannon, Michael D. Hildreth |
| 2013 | SC | Design of an active storage cluster file system for DAG workflows. | Patrick Donnelly, Douglas Thain |
| 2012 | CCGRID | Fine-Grained Access Control in the Chirp Distributed File System. | Patrick Donnelly, Douglas Thain |
| 2012 | SIGMOD | Makeflow: a portable abstraction for data intensive computing on clusters, clouds, and grids. | Michael Albrecht, Patrick Donnelly, Peter Bui, Douglas Thain |
| 2010 | CloudCom | Attaching Cloud Storage to a Campus Grid Using Parrot, Chirp, and Hadoop. | Patrick Donnelly, Peter Bui, Douglas Thain |