| 2013 | BIBE | Automated selection of differentially methylated regions in microarray data. | Pavlos Antoniou, Spiros Michalakopoulos, Elisavet A. Papageorgiou, Philippos C. Patsalis, Carolina Sismani |
| 2009 | CEC | Employing the flocking behavior of birds for controlling congestion in autonomous decentralized networks. | Pavlos Antoniou, Andreas Pitsillides, Tim Blackwell, Andries P. Engelbrecht |
| 2009 | ICANN | Congestion Control in Autonomous Decentralized Networks Based on the Lotka-Volterra Competition Model. | Pavlos Antoniou, Andreas Pitsillides |
| 2007 | ISCC | Adaptive Feedback Algorithm for Internet Video Streaming based on Fuzzy Rate Control. | Pavlos Antoniou, Andreas Pitsillides, Vasos Vassiliou |
| 2007 | LATA | Application of suffix trees for the acquisition of common motifs with gaps in a set of strings. | Pavlos Antoniou, Maxime Crochemore, Costas S. Iliopoulos, Pierre Peterlongo |
| 2007 | PIMRC | ADIVIS: A Novel Adaptive Algorithm for Video Streaming over the Internet. | Pavlos Antoniou, Vasos Vassiliou, Andreas Pitsillides |
| 2006 | ICANN | Requirements for the Transmission of Streaming Video in Mobile Wireless Networks. | Vasos Vassiliou, Pavlos Antoniou, Iraklis Giannakou, Andreas Pitsillides |