| 2025 | ICIP | Multimodal Cell Context Instruction Tuning for Conditional DNA Regulatory Sequence Generation with Large Language Models. | Junhao Liu, Pengpeng Zhang, Siwei Xu, Shushrruth Sai Srinivasan, Yongxian Wu, Jing Zhang |
| 2025 | KDD | Identifying Combinatorial Regulatory Genes for Cell Fate Decision via Reparameterizable Subset Explanations. | Junhao Liu, Pengpeng Zhang, Martin Renqiang Min, Jing Zhang |
| 2020 | MICCAI | Longitudinal Prediction of Radiation-Induced Anatomical Changes of Parotid Glands During Radiotherapy Using Deep Learning. | Donghoon Lee, Sadegh R. Alam, Saad Nadeem, Jue Jiang, Pengpeng Zhang, Yu-Chi Hu |
| 2018 | MICCAI | Tumor-Aware, Adversarial Domain Adaptation from CT to MRI for Lung Cancer Segmentation. | Jue Jiang, Yu-Chi Hu, Neelam Tyagi, Pengpeng Zhang, Andreas Rimner, Gig S. Mageras, Joseph O. Deasy, Harini Veeraraghavan |
| 2001 | MICCAI | Medial Axis Seeding of a Guided Evolutionary Simulated Annealing (GESA) Algorithm for Automated Gamma Knife Radiosurgery Treatment Planning. | David Dean, Pengpeng Zhang, Andrew Metzger, Claudio H. Sibata, Robert J. Maciunas |