| 2025 | NAACL | Uncertainty Quantification for Clinical Outcome Predictions with (Large) Language Models. | Zizhang Chen, Peizhao Li, Xiaomeng Dong, Pengyu Hong |
| 2023 | ICLR | Characterizing the Influence of Graph Elements. | Zizhang Chen, Peizhao Li, Hongfu Liu, Pengyu Hong |
| 2021 | ICLR | On Dyadic Fairness: Exploring and Mitigating Bias in Graph Connections. | Peizhao Li, Yifei Wang, Han Zhao, Pengyu Hong, Hongfu Liu |
| 2020 | CIKM | NagE: Non-Abelian Group Embedding for Knowledge Graphs. | Tong Yang, Long Sha, Pengyu Hong |
| 2020 | ICLR | Probabilistic Connection Importance Inference and Lossless Compression of Deep Neural Networks. | Xin Xing, Long Sha, Pengyu Hong, Zuofeng Shang, Jun S. Liu |
| 2012 | AMIA | Towards an Annotation Schema for Cancer Trajectory State Detection. | Jeremy L. Warner, Peter Anick, Kenneth Roach, Nianwen Xue, Robin M. Joyce, Charles Safran, Pengyu Hong |
| 2007 | BIBE | Intelligent Interfaces for Mining Large-Scale RNAi-HCS Image Databases. | Chen Lin, Wayne Mak, Pengyu Hong, Katharine J. Sepp, Norbert Perrimon |
| 2007 | ISMB | Computational modeling of | Xiaoyun Sun, Pengyu Hong |
| 2004 | ACL | Optimization in Multimodal Interpretation. | Joyce Y. Chai, Pengyu Hong, Michelle X. Zhou, Zahar Prasov |
| 2004 | BIBE | Towards Ubiquitous Bio-Information Computing: Data Protocols, Middleware, and Web Services for Heterogeneous Biological Information Integration and Retrieval. | Pengyu Hong, Sheng Zhong, Wing Hung Wong |
| 2004 | IUI | A probabilistic approach to reference resolution in multimodal user interfaces. | Joyce Y. Chai, Pengyu Hong, Michelle X. Zhou |
| 2004 | NAACL | Performance Evaluation and Error Analysis for Multimodal Reference Resolution in a Conversation System. | Joyce Y. Chai, Zahar Prasov, Pengyu Hong |
| 2002 | ICASSP | Automatic temporal pattern extraction and association. | Pengyu Hong, Thomas S. Huang |
| 2002 | ICASSP | Exemplar-based face and facial motion tracking. | Thomas S. Huang, Pengyu Hong |
| 2002 | ICPR | Multimodal Temporal Pattern Mining. | Pengyu Hong, Thomas S. Huang |
| 2000 | CVPR | Learning Patterns from Images by Combining Soft Decisions and Hard Decisions. | Pengyu Hong, Thomas S. Huang, Roy Wang |
| 2000 | ICIP | Incorporate Support Vector Machines to Content-Based Image Retrieval with Relevant Feedback. | Pengyu Hong, Qi Tian, Thomas S. Huang |
| 2000 | ICPR | Learning to Extract Temporal Signal Patterns from Temporal Signal Sequence. | Pengyu Hong, Thomas S. Huang |
| 2000 | ICPR | Constructing Finite State Machines for Fast Gesture Recognition. | Pengyu Hong, Thomas S. Huang, Matthew Turk |
| 2000 | ICPR | Memory-Based Moving Object Extraction for Video Indexing. | Roy Wang, Pengyu Hong, Thomas S. Huang |
| 1999 | ICIP | Natural Mouse; A Novel Human Computer Interface. | Pengyu Hong, Thomas S. Huang |
| 1999 | IJCNN | A new scheme for extracting multi-temporal sequence patterns. | Pengyu Hong, Sylvian R. Ray, Thomas S. Huang |
| 1998 | MMSP | Mouth motion learning and generating from observation. | Pengyu Hong, Thomas S. Huang, Xueyin Lin |