| 2024 | EMNLP | Adaptive Question Answering: Enhancing Language Model Proficiency for Addressing Knowledge Conflicts with Source Citations. | Sagi Shaier, Ari Kobren, Philip V. Ogren |
| 2014 | LREC | ClearTK 2.0: Design Patterns for Machine Learning in UIMA. | Steven Bethard, Philip V. Ogren, Lee Becker |
| 2010 | NAACL | Improving Syntactic Coordination Resolution using Language Modeling. | Philip V. Ogren |
| 2008 | LREC | Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. | Philip V. Ogren, Guergana K. Savova, Christopher G. Chute |
| 2008 | LREC | System Evaluation on a Named Entity Corpus from Clinical Notes. | Karin Schuler, Vinod Kaggal, James J. Masanz, Philip V. Ogren, Guergana K. Savova |
| 2006 | AMIA | Building and Evaluating Annotated Corpora for Medical NLP Systems. | Philip V. Ogren, Guergana Savova, James D. Buntrock, Christopher G. Chute |
| 2006 | NAACL | Knowtator: A Protg plug-in for annotated corpus construction. | Philip V. Ogren |
| 2005 | AMIA | Empirical data on corpus design and usage in biomedical natural language processing. | K. Bretonnel Cohen, Philip V. Ogren, Lynne M. Fox, Lawrence Hunter |
| 2005 | ISMB | Corpus Design for Biomedical Natural Language Processing. | K. Bretonnel Cohen, Lynne M. Fox, Philip V. Ogren, Lawrence Hunter |
| 2005 | PSB | Implications of Compositionality in the Gene Ontology for Its Curation and Usage . | Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter |
| 2004 | PSB | The Compositional Structure of Gene Ontology Terms. | Philip V. Ogren, K. Bretonnel Cohen, George K. Acquaah-Mensah, Jens Eberlein, Lawrence Hunter |
| 2000 | AMIA | A randomized controlled trial of concept based indexing of Web page content. | Peter L. Elkin, Alexander Ruggieri, Larry Bergstrom, Brent A. Bauer, Mark Lee, Philip V. Ogren, Christopher G. Chute |
| 2000 | AMIA | A formal approach to integrating synonyms with a reference terminology. | Harold R. Solbrig, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute |
| 1999 | AMIA | A randomized double-blind controlled trial of automated term dissection. | Peter L. Elkin, Kent R. Bailey, Philip V. Ogren, Brent A. Bauer, Christopher G. Chute |
| 1999 | AMIA | A large-scale evaluation of terminology integration characteristics. | Furman S. McDonald, Christopher G. Chute, Philip V. Ogren, Dietlind Wahner-Roedler, Peter L. Elkin |
| 1999 | AMIA | Barriers to the clinical implementation of compositionality. | Lawrence K. McKnight, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute |