| 2023 | CiE | Graph Subshifts. | Pablo Arrighi, Amlia Durbec, Pierre Guillon |
| 2021 | STACS | Rice-Like Theorems for Automata Networks. | Guilhem Gamard, Pierre Guillon, Kvin Perrot, Guillaume Theyssier |
| 2019 | CSR | Undecidable Word Problem in Subshift Automorphism Groups. | Pierre Guillon, Emmanuel Jeandel, Jarkko Kari, Pascal Vanier |
| 2017 | MFCS | Comparison of Max-Plus Automata and Joint Spectral Radius of Tropical Matrices. | Laure Daviaud, Pierre Guillon, Glenn Merlet |
| 2017 | TAMC | On the Cost of Simulating a Parallel Boolean Automata Network by a Block-Sequential One. | Florian Bridoux, Pierre Guillon, Kvin Perrot, Sylvain Sen, Guillaume Theyssier |
| 2012 | CiE | Densities and Entropies in Cellular Automata. | Pierre Guillon, Charalampos Zinoviadis |
| 2010 | CSR | Zigzags in Turing Machines. | Anah Gajardo, Pierre Guillon |
| 2010 | STACS | Ultimate Traces of Cellular Automata. | Julien Cervelle, Enrico Formenti, Pierre Guillon |
| 2010 | STACS | Revisiting the Rice Theorem of Cellular Automata. | Pierre Guillon, Gatan Richard |
| 2008 | MFCS | Nilpotency and Limit Sets of Cellular Automata. | Pierre Guillon, Gatan Richard |
| 2007 | CiE | Sofic Trace Subshift of a Cellular Automaton. | Julien Cervelle, Enrico Formenti, Pierre Guillon |
| 2007 | MFCS | Towards a Rice Theorem on Traces of Cellular Automata. | Julien Cervelle, Pierre Guillon |
| 2006 | RECOMB | Inferring Gene Orders from Gene Maps Using the Breakpoint Distance. | Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk |