| 2025 | CaiSE | Leveraging Profiling to Bridge Healthcare Silos for Federated Analyses. | Nelly Barret, Anna Bernasconi, Cinzia Cappiello, Giacomo Palu, Pietro Pinoli |
| 2025 | ICIAP | GeMM-GAN: A Multimodal Generative Model Conditioned on Histopathology Images and Clinical Descriptions for Gene Expression Profile Generation. | Francesca Pia Panaccione, Carlo Sgaravatti, Pietro Pinoli |
| 2022 | AVI | MCTK: a Multi-modal Conversational Troubleshooting Kit for supporting users in web applications. | Giulio Antonio Abbo, Pietro Crovari, Sara Pid, Pietro Pinoli, Franca Garzotto |
| 2022 | EDBT | Conceptual models and databases for searching the genome. | Anna Bernasconi, Pietro Pinoli |
| 2022 | IC3K | Generalization of Probabilistic Latent Semantic Analysis to k-partite Graphs. | Yohann Salomon, Pietro Pinoli |
| 2020 | ER | Empowering Virus Sequence Research Through Conceptual Modeling. | Anna Bernasconi, Arif Canakoglu, Pietro Pinoli, Stefano Ceri |
| 2020 | PSB | Impact of Mutational Signatures on microRNA and Their Response Elements. | Eirini Stamoulakatou, Pietro Pinoli, Stefano Ceri, Rosario M. Piro |
| 2019 | BIBE | Deleterious Impact of Mutational Processes on Transcription Factor Binding Sites in Human Cancer. | Pietro Pinoli, Eirini Stamoulakatou, Stefano Ceri, Rosario M. Piro |
| 2019 | CIBCB | Non-negative Matrix Tri-Factorization for Data Integration and Network-based Drug Repositioning. | Gaia Ceddia, Pietro Pinoli, Stefano Ceri, Marco Masseroli |
| 2018 | CIKM | Demonstration of GenoMetric Query Language. | Stefano Ceri, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli |
| 2018 | SIGMOD | Exploring Genomic Datasets: from Batch to Interactive and Back. | Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri |
| 2017 | DATA | Experiences in the Development of a Data Management System for Genomics. | Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli |
| 2017 | ICWE | Evaluating Genomic Big Data Operations on SciDB and Spark. | Simone Cattani, Stefano Ceri, Abdulrahman Kaitoua, Pietro Pinoli |
| 2017 | SIGMOD | Bi-Dimensional Binning for Big Genomic Datasets. | Simone Cattani, Stefano Ceri, Abdulrahman Kaitoua, Pietro Pinoli |
| 2016 | EDBT | Data Management for Next Generation Genomic Computing. | Stefano Ceri, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli, Francesco Venco |
| 2014 | CIBCB | Latent Dirichlet Allocation based on Gibbs Sampling for gene function prediction. | Pietro Pinoli, Davide Chicco, Marco Masseroli |
| 2014 | IC3K | Discovering New Gene Functionalities from Random Perturbations of Known Gene Ontological Annotations. | Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli |
| 2014 | IC3K | Random Perturbations of Term Weighted Gene Ontology Annotations for Discovering Gene Unknown Functionalities. | Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli |
| 2013 | BIBE | Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations. | Pietro Pinoli, Davide Chicco, Marco Masseroli |
| 2012 | IJCNN | Probabilistic Latent Semantic Analysis for prediction of Gene Ontology annotations. | Marco Masseroli, Davide Chicco, Pietro Pinoli |