| 2026 | ASPLOS | Architecting Scalable Trapped Ion Quantum Computers using Surface Codes. | Scott Jones, Prakash Murali |
| 2026 | CGO | Space-Time Optimisations for Early Fault-Tolerant Quantum Computation. | Sanaa Sharma, Prakash Murali |
| 2025 | QCE | Is Circuit Cutting Scalable for Practical Quantum Applications? | Songqinghao Yang, Prakash Murali |
| 2024 | QCE | Utilizing Resource Estimation for the Development of Quantum Computing Applications. | Nils Quetschlich, Mathias Soeken, Prakash Murali, Robert Wille |
| 2021 | ISCA | Designing Calibration and Expressivity-Efficient Instruction Sets for Quantum Computing. | Lingling Lao, Prakash Murali, Margaret Martonosi, Dan E. Browne |
| 2021 | QCE | Adaptive job and resource management for the growing quantum cloud. | Gokul Subramanian Ravi, Kaitlin N. Smith, Prakash Murali, Frederic T. Chong |
| 2020 | ASPLOS | Software Mitigation of Crosstalk on Noisy Intermediate-Scale Quantum Computers. | Prakash Murali, David C. McKay, Margaret Martonosi, Ali Javadi-Abhari |
| 2020 | ISCA | Architecting Noisy Intermediate-Scale Trapped Ion Quantum Computers. | Prakash Murali, Dripto M. Debroy, Kenneth R. Brown, Margaret Martonosi |
| 2019 | ASPLOS | Noise-Adaptive Compiler Mappings for Noisy Intermediate-Scale Quantum Computers. | Prakash Murali, Jonathan M. Baker, Ali Javadi-Abhari, Frederic T. Chong, Margaret Martonosi |
| 2019 | ISCA | Full-stack, real-system quantum computer studies: architectural comparisons and design insights. | Prakash Murali, Norbert Matthias Linke, Margaret Martonosi, Ali Javadi-Abhari, Nhung Hong Nguyen, Cinthia Huerta Alderete |
| 2018 | EuroPar | Improved Distributed Algorithm for Graph Truss Decomposition. | Venkatesan T. Chakaravarthy, Aashish Goyal, Prakash Murali, Shivmaran S. Pandian, Yogish Sabharwal |
| 2018 | ICS | On Optimizing Distributed Tucker Decomposition for Sparse Tensors. | Venkatesan T. Chakaravarthy, Jee W. Choi, Douglas J. Joseph, Prakash Murali, Shivmaran S. Pandian, Yogish Sabharwal, Dheeraj Sreedhar |
| 2015 | HiPC | Metascheduling of HPC Jobs in Day-Ahead Electricity Markets. | Prakash Murali, Sathish S. Vadhiyar |