| 2025 | MICCAI | Self-supervised Vision Transformers for Prostate Cancer Classification in Biparametric MRI. | Shebna Rose D. Fabilloren, Jose Conrado T. Paulino, Johanna Patricia A. Caal, Prospero C. Naval Jr. |
| 2024 | ACIIDS | Phishing Detection Using Ensemble of Classifiers. | David Raphael M. Daza, Frank Cally A. Tabuco, Prospero C. Naval Jr. |
| 2024 | ACIIDS | Philippine Lime (Calamansi) Disease Detection and Classification Using YOLOv8 Model. | Ma. Madecheen S. Pangaliman, Kathleen M. Manalo, Prospero C. Naval Jr. |
| 2024 | COLING | Beyond Canonical Fine-tuning: Leveraging Hybrid Multi-Layer Pooled Representations of BERT for Automated Essay Scoring. | Eujene Nikka V. Boquio, Prospero C. Naval Jr. |
| 2024 | ICONIP | Automated Landslide Detection: A Comparative Study of Change Detection and Semantic Segmentation Techniques. | Samuel Cerrudo, Daniel De Castro, Prospero C. Naval Jr. |
| 2024 | ICONIP | USAM-Net: A U-Net-Based Network for Improved Stereo Correspondence and Scene Depth Estimation Using Features from a Pre-trained Image Segmentation Network. | Joseph Emmanuel DL Dayo, Prospero C. Naval Jr. |
| 2023 | MVA | Multi-class Semantic Segmentation of Tooth Pathologies and Anatomical Structures on Bitewing and Periapical Radiographs. | James-Andrew Sarmiento, Liushifeng Chen, Prospero C. Naval Jr. |
| 2022 | ICCCI | Unraveling COVID-19 Misinformation with Latent Dirichlet Allocation and CatBoost. | Joy Nathalie M. Avelino, Edgardo P. Felizmenio Jr., Prospero C. Naval Jr. |
| 2019 | ACIIDS | Simultaneous Localization and Segmentation of Fish Objects Using Multi-task CNN and Dense CRF. | Alfonso B. Labao, Prospero C. Naval Jr. |
| 2019 | ACIIDS | Multi-scale Autoencoders in Autoencoder for Semantic Image Segmentation. | John Paul Tan Yusiong, Prospero C. Naval Jr. |
| 2018 | ACIIDS | Vertebra Fracture Classification from 3D CT Lumbar Spine Segmentation Masks Using a Convolutional Neural Network. | Charmae B. Antonio, Louise Gillian C. Bautista, Alfonso B. Labao, Prospero C. Naval Jr. |
| 2018 | ACIIDS | Classification of Bird Sounds Using Codebook Features. | Alfonso B. Labao, Mark A. Clutario, Prospero C. Naval Jr. |
| 2018 | ACIIDS | Analysis of Convolutional Neural Networks and Shape Features for Detection and Identification of Malaria Parasites on Thin Blood Smears. | Kristofer delas Peas, Pilarita T. Rivera, Prospero C. Naval Jr. |
| 2018 | ICONIP | Induced Exploration on Policy Gradients by Increasing Actor Entropy Using Advantage Target Regions. | Alfonso B. Labao, Carlo R. Raquel, Prospero C. Naval Jr. |
| 2017 | ACIIDS | Weakly-Labelled Semantic Segmentation of Fish Objects in Underwater Videos Using a Deep Residual Network. | Alfonso B. Labao, Prospero C. Naval Jr. |
| 2017 | CHASE | Malaria Parasite Detection and Species Identification on Thin Blood Smears Using a Convolutional Neural Network. | Kristofer delas Peas, Pilarita T. Rivera, Prospero C. Naval Jr. |
| 2014 | ACIIDS | A Coral Mapping and Health Assessment System Based on Texture Analysis. | Prospero C. Naval Jr., Maricor Soriano, Bianca Camille Esmero, Zorina Maika Abad |
| 2008 | GECCO | Design of stock trading system for historical market data using multiobjective particle swarm optimization of technical indicators. | Antonio C. Briza, Prospero C. Naval Jr. |
| 2007 | ISNN | An Evolutionary Multi-objective Neural Network Optimizer with Bias-Based Pruning Heuristic. | Prospero C. Naval Jr., John Paul Tan Yusiong |
| 2006 | ICNC | Training Neural Networks Using Multiobjective Particle Swarm Optimization. | John Paul Tan Yusiong, Prospero C. Naval Jr. |
| 2005 | GECCO | An effective use of crowding distance in multiobjective particle swarm optimization. | Carlo R. Raquel, Prospero C. Naval Jr. |