| 2021 | ICML | Segmenting Hybrid Trajectories using Latent ODEs. | Ruian Shi, Quaid Morris |
| 2020 | ICLR | Memory-Based Graph Networks. | Amir Hosein Khas Ahmadi, Kaveh Hassani, Parsa Moradi, Leo Lee, Quaid Morris |
| 2020 | PSB | TrackSigFreq: Subclonal Reconstructions Based on Mutation Signatures and Allele Frequencies. | Caitlin F. Harrigan, Yulia Rubanova, Quaid Morris, Alina Selega |
| 2020 | PSB | Genome Gerrymandering: Optimal Division of the Genome into Regions with Cancer Type SpecificDifferences in Mutation Rates. | Adamo Young, Jacob Chmura, Yoon-Sik Park, Quaid Morris, Gurnit Atwal |
| 2020 | PSB | Identifying Transitional High Cost Users from Unstructured Patient Profiles Written by Primary CarePhysicians. | Haoran Zhang, Elisa Candido, Andrew S. Wilton, Raquel Duchen, Liisa Jaakkimainen, Walter P. Wodchis, Quaid Morris |
| 2018 | ICLR | Reconstructing evolutionary trajectories of mutations in cancer. | Yulia Rubanova, Ruian Shi, Roujia Li, Jeff Wintersinger, Amit G. Deshwar, Nil Sahin, Quaid Morris |
| 2017 | ICLR | Reinterpreting Importance-Weighted Autoencoders. | Chris Cremer, Quaid Morris, David Duvenaud |
| 2016 | PSB | Session Introduction. | Drena Dobbs, Steven E. Brenner, Vasant G. Honavar, Robert L. Jernigan, Alain Laederach, Quaid Morris |
| 2015 | PSB | Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors. | Amit G. Deshwar, Shankar Vembu, Quaid Morris |
| 2014 | PSB | Session introduction. | Jennifer Listgarten, Oliver Stegle, Quaid Morris, Steven E. Brenner, Leopold Parts |
| 2014 | PSB | An Efficient Algorithm to Integrate Network and Attribute Data for Gene Function Prediction. | Shankar Vembu, Quaid Morris |
| 2013 | PSB | The Future of Genome-Based Medicine. | Quaid Morris, Steven E. Brenner, Jennifer Listgarten, Oliver Stegle |
| 2013 | PSB | Session introduction. | Oliver Stegle, Steven E. Brenner, Quaid Morris, Jennifer Listgarten |
| 2012 | PSB | Session introduction. | Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten |
| 2012 | PSB | Mixture Model for Sub-Phenotyping in GWAS. | David Warde-Farley, Michael Brudno, Quaid Morris, Anna Goldenberg |
| 2009 | PSB | Post-Transcriptional Gene Regulation: RNA-Protein Interactions, RNA Processing, mRNA Stability and Localization. | Benjamin J. Blencowe, Steven E. Brenner, Timothy R. Hughes, Quaid Morris |
| 2009 | UAI | Using the Gene Ontology Hierarchy when Predicting Gene Function. | Sara Mostafavi, Quaid Morris |
| 2008 | PSB | Comparing Sequence and Expression for Predicting microRNA Targets Using GenMIR3. | Jim C. Huang, Brendan J. Frey, Quaid Morris |
| 2007 | ISMB | RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. | Xiaoyu Chen, Timothy R. Hughes, Quaid Morris |
| 2006 | ICONIP | Connectionist Approaches for Predicting Mouse Gene Function from Gene Expression. | Emad A. M. Andrews Shenouda, Quaid Morris, Anthony J. Bonner |
| 2006 | RECOMB | Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data. | Jim C. Huang, Quaid Morris, Brendan J. Frey |
| 2005 | ISMB | Multi-way clustering of microarray data using probabilistic sparse matrix factorization. | Delbert Dueck, Quaid Morris, Brendan J. Frey |
| 2005 | ISMB | GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. | Jim C. Huang, Quaid Morris, Timothy R. Hughes, Brendan J. Frey |
| 2005 | PSB | GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data. | Brendan J. Frey, Quaid Morris, Wen Zhang, Naveed Mohammad, Timothy R. Hughes |
| 2005 | RECOMB | Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model. | Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes |
| 2001 | UAI | Recognition Networks for Approximate Inference in BN20 Networks. | Quaid Morris |
| 1996 | ECCV | A Maximum-Likelihood Approach to Visual Event Classification. | Jeffrey Mark Siskind, Quaid Morris |