| 2020 | EANN | Computational Complexity of Kabsch and Quaternion Based Algorithms for Molecular Superimposition in Computational Chemistry. | Rafael Dolezal, Katerina Fronckova, Ayca Kirimtat, Ondrej Krejcar |
| 2017 | ACIIDS | Structure-Based Virtual Screening for Novel Modulators of Human Orexin 2 Receptor with Cloud Systems and Supercomputers. | Rafael Dolezal, Eugenie Nepovimova, Michaela Melikova, Kamil Kuca |
| 2017 | ICCCI | ANN and GMDH Algorithms in QSAR Analyses of Reactivation Potency for Acetylcholinesterase Inhibited by VX Warfare Agent. | Rafael Dolezal, Jiri Krenek, Veronika Racakova, Natalie Karaskova, Nadezhda V. Maltsevskaya, Michaela Melikova, Karel Kolar, Jan Trejbal, Kamil Kuca |
| 2016 | ICCCI | Rational Discovery of GSK3-Beta Modulators Aided by Protein Pocket Prediction and High-Throughput Molecular Docking. | Rafael Dolezal, Michaela Melikova, Jakub Mesicek, Kamil Kuca |
| 2016 | ICCCI | Designing QSAR Models for Promising TLR4 Agonists Isolated from Euodia Asteridula by Artificial Neural Networks Enhanced by Optimal Brain Surgeon. | Rafael Dolezal, Jan Trejbal, Jakub Mesicek, Agata Milanov, Veronika Racakova, Jiri Krenek |
| 2016 | ICCCI | Simulations of Light Propagation and Thermal Response in Biological Tissues Accelerated by Graphics Processing Unit. | Jakub Mesicek, Jan Zdarsky, Rafael Dolezal, Ondrej Krejcar, Kamil Kuca |
| 2015 | ACIIDS | HPC Cloud Technologies for Virtual Screening in Drug Discovery. | Rafael Dolezal, Vladimir Sobeslav, Ondrej Hornig, Ladislav Balik, Jan Korabecny, Kamil Kuca |
| 2015 | EPIA | Variable Elimination Approaches for Data-Noise Reduction in 3D QSAR Calculations. | Rafael Dolezal, Agta Bodnrov, Richard Cimler, Martina Huskov, Lukas Najman, Veronika Racakova, Jiri Krenek, Jan Korabecny, Kamil Kuca, Ondrej Krejcar |
| 2015 | ICCCI | Endpoint Firewall for Local Security Hardening in Academic Research Environment. | Ladislav Balik, Josef Horalek, Ondrej Hornig, Vladimir Sobeslav, Rafael Dolezal, Kamil Kuca |
| 2015 | ICCCI | Parallel Flexible Molecular Docking in Computational Chemistry on High Performance Computing Clusters. | Rafael Dolezal, Teodorico C. Ramalho, Tanos C. C. Franca, Kamil Kuca |