| 2025 | FlAIRS | Identifying Developmental Intellectual Disability as a SUDEP Risk Marker from Epilepsy Monitoring Unit Reports Using Large Language Models. | Ran Hu, Rashmie Abeysinghe, Gorbachev Jowah, Shiqiang Tao, Samden D. Lhatoo, Guo-Qiang Zhang, Licong Cui |
| 2025 | TIME | Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials. | Xiaojin Li, Yan Huang, Rashmie Abeysinghe, Zenan Sun, Hongyu Chen, Pengze Li, Xing He, Shiqiang Tao, Cui Tao, Jiang Bian, Licong Cui, Guo-Qiang Zhang |
| 2024 | AIME | Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS. | Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui |
| 2022 | AMIA | Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. | Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui |
| 2021 | AMIA | A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology. | Rashmie Abeysinghe, Fengbo Zheng, Licong Cui |
| 2019 | AMIA | Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus. | Rashmie Abeysinghe, Michael A. Brooks, Licong Cui |
| 2018 | AMIA | Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels. | Rashmie Abeysinghe, Xufeng Qu, Licong Cui |
| 2017 | AMIA | Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns. | Rashmie Abeysinghe, Michael A. Brooks, Jeffery C. Talbert, Licong Cui |